View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_high_56 (Length: 239)
Name: NF18809_high_56
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 3380600 - 3380499
Alignment:
| Q |
14 |
aaaattcaacaatttaatgaaatatttctagtgaaaacaaaacaaatgttcaaaggagattcgcaacccatgagaaaatatacaacaccataatgcaaaa |
113 |
Q |
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| T |
3380600 |
aaaattcaacaatttaataaaatatttctggtaaaaacaaaacaaatgttcaaaggagataagcaacccataggaaaatatacaacaacataatacaaaa |
3380501 |
T |
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| Q |
114 |
aa |
115 |
Q |
| |
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|| |
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| T |
3380500 |
aa |
3380499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 3380195 - 3380140
Alignment:
| Q |
125 |
aaaagcgattagcaacctatagaaaaatagcagtataaaacagatattttgatgaa |
180 |
Q |
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| T |
3380195 |
aaaagtgattagcaacccatagaaaaatagcattataaaacaaagattttgatgaa |
3380140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 3380124 - 3380081
Alignment:
| Q |
176 |
atgaaagcaaactgggaaagaatatagcgaaatatttgttcttg |
219 |
Q |
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| T |
3380124 |
atgaaagcaaactgggaaagagtatggcaaaatatttgttcttg |
3380081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41799998 - 41799918
Alignment:
| Q |
1 |
tcttgcgacattgaaaattcaacaatttaatgaaatatttctagtgaaaacaaaacaaatgttcaaaggagattcgcaacc |
81 |
Q |
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| T |
41799998 |
tcttgcgacattgaaaattcaacaatttaatgaaatatttctagtgaaaacaagacaaatgatcaaaagcgattagcaacc |
41799918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 41798693 - 41798649
Alignment:
| Q |
179 |
aaagcaaactgggaaagaatatagcgaaatatttgttcttgaaag |
223 |
Q |
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| T |
41798693 |
aaagcaaactgggaaagaatatagcgaaatatttgttcttgaaag |
41798649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 10595421 - 10595468
Alignment:
| Q |
21 |
aacaatttaatgaaatatttctagtgaaaacaaaacaaatgttcaaag |
68 |
Q |
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| T |
10595421 |
aacaatttaatgaaatatttctggtaaaaacaaaacaaatgttcaaag |
10595468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 38138121 - 38138067
Alignment:
| Q |
14 |
aaaattcaacaatttaatgaaatatttctagtgaaaacaaaacaaatgttcaaag |
68 |
Q |
| |
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|||| |||| ||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
38138121 |
aaaaatcaaaaatttaatgaaatatttcttgttaaaacaaaacaaatgttcaaag |
38138067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 41799944 - 41799907
Alignment:
| Q |
115 |
acaaatgatcaaaagcgattagcaacctatagaaaaat |
152 |
Q |
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| T |
41799944 |
acaaatgatcaaaagcgattagcaacctatagaaaaat |
41799907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 41798747 - 41798714
Alignment:
| Q |
147 |
aaaaatagcagtataaaacagatattttgatgaa |
180 |
Q |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
41798747 |
aaaaatagcagtataaaacagatattttgatgaa |
41798714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 2941842 - 2941802
Alignment:
| Q |
23 |
caatttaatgaaatatttctagtgaaaacaaaacaaatgtt |
63 |
Q |
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| T |
2941842 |
caatttaatgaaatatttctggtaaaaacaaaacaaatgtt |
2941802 |
T |
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