View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18809_high_60 (Length: 235)

Name: NF18809_high_60

Description: NF18809

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18809_high_60

[»] chr4 (5 HSPs)

Alignment Details

Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 5)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 119; E-Value: 6e-61

Query Start/End: Original strand, 113 - 235

Target Start/End: Original strand, 23430456 - 23430578

Alignment:

Q	113	gcttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagttgatactcttcctaccatggcgctttctg	212	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23430456	gcttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgctgctcatgctcctagttgatactcttcctaccatggcgctttctg	23430555	T

Q	213	aagaggttaagaatcttcccacc	235	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23430556	aagaggttaagaatcttcccacc	23430578	T

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Target: chr4; HSP #2

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 16 - 94

Target Start/End: Original strand, 23430391 - 23430468

Alignment:

Q	16	catttttcatctatatataaagcgagaatcatacattaattaaatccatttttcttctacaataaagcttattattact	94	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23430391	catttttcatctatatataaaacgagaatcatacattaattaaatcca-ttttcttctacaataaagcttattattact	23430468	T

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Target: chr4; HSP #3

Raw Score: 51; E-Value: 2e-20

Query Start/End: Original strand, 113 - 234

Target Start/End: Original strand, 23438513 - 23438635

Alignment:

Q	113	gcttattattactttctcttgcatac-aaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagttgatactcttcctaccatggcgctttct	211	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\| \| \|\| \|\|\|\|\|\|\|
T	23438513	gcttatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttct	23438612	T

Q	212	gaagaggttaagaatcttcccac	234	Q
		\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|
T	23438613	aaagaggttgagactcttcccac	23438635	T

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Target: chr4; HSP #4

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 114 - 184

Target Start/End: Original strand, 23445250 - 23445320

Alignment:

Q	114	cttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagtt	184	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|
T	23445250	cttatttttactttctcttgcatatcaaaatgtccaaagccatgaccttagtgttgctcctcctcctagtt	23445320	T

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Target: chr4; HSP #5

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 16 - 94

Target Start/End: Original strand, 23438443 - 23438525

Alignment:

Q	16	catttttcatctatatataaagcgagaatcatacattaattaa----atccatttttcttctacaataaagcttattattact	94	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	23438443	catttttcttctatatataaagcaagaattagacattcattactcacatccatttttcttcaataataaagcttatttttact	23438525	T

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