View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_high_7 (Length: 656)
Name: NF18809_high_7
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 104 - 638
Target Start/End: Complemental strand, 7654775 - 7654240
Alignment:
| Q |
104 |
atgtagagctctcactgtaagccatgccagatccttgaccagcaaaaacaaaaataagcatggagaaaaattcagcgaatgcagctctaattgcatcagg |
203 |
Q |
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| T |
7654775 |
atgtagagctctcactgtaagccatgccagatccttgaccagcaaaaacaaaaataagcatggagaaaaattcagcaaatgcagctctaattgcatcagg |
7654676 |
T |
|
| Q |
204 |
ttgaccagcctctccaggagatccaattgcaattctatggattgccattattattattaattatctcaagaatcagaacctatagaaacagatcaaaaga |
303 |
Q |
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| T |
7654675 |
ttgaccagcctctccaggagatccaattgcaattctatggattgccattattattattaattagttcaagaatcgaaacttatagaaacagataaaaaga |
7654576 |
T |
|
| Q |
304 |
gaagatcagattcttatttatgtgtttcttgattatatttcttttctgtataatttggttgaaattaaggggaaactataagagctttgtttagtgttta |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7654575 |
gaagatcagattcttatttatgtgtttcttgattatatttctttt---tataatttggttgaaattaaggggacactataagagctttgtttagtgttta |
7654479 |
T |
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| Q |
404 |
aataccaaaataaacggccaaggaaacggtcactgtgtgagactgtataggtttcaattatatgt----gccatgcatgcagctagtgaagtgagtgagc |
499 |
Q |
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| T |
7654478 |
aataccaaaataaacggccaaggaaacggtcactgtgtgagactgtataggtttcaattatatgtgcaagctatgcatgcagctagtgaagtgagtgagc |
7654379 |
T |
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| Q |
500 |
tacttggtcatagttttgacatgtatgtggctgtgaattgatgtagctgtaggtgaaattggagatcatagtaaaaaccattggttgattatgatagtgt |
599 |
Q |
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| T |
7654378 |
tacttggtcatagttttgacatgtatgtggctgtgaattgatgtagctgtaggtgaaattggagatcacagtaaaaaccattggttgattatgatagtgt |
7654279 |
T |
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| Q |
600 |
aatattttcaccgaaagtaacgggtagccttaacatttg |
638 |
Q |
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| T |
7654278 |
aatattttcaccgaaagtaacgggtagccttaacatttg |
7654240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 7654923 - 7654820
Alignment:
| Q |
3 |
aacaccaacacatgttagacactcgaaatcgcctacaatctgaaatgtcgattctacctaaatgtacatcgagtcaatcttttattaaaaacgtaaatag |
102 |
Q |
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| T |
7654923 |
aacaccaacacatgttagacactcgaaatcgcctacaatctgaaatgtcgattctacctaaatgtacatcaagtcaatcttttattaaaaacgtaaatag |
7654824 |
T |
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| Q |
103 |
aatg |
106 |
Q |
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|||| |
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| T |
7654823 |
aatg |
7654820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 114 - 253
Target Start/End: Original strand, 52103506 - 52103645
Alignment:
| Q |
114 |
ctcactgtaagccatgccagatccttgaccagcaaaaacaaaaataagcatggagaaaaattcagcgaatgcagctctaattgcatcaggttgaccagcc |
213 |
Q |
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|||||| || ||||||||||| ||||| ||||||||||||||||| ||||| ||||| || || || || || |||||||||||| |||| | | |||| |
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| T |
52103506 |
ctcactataggccatgccagagccttggccagcaaaaacaaaaatgagcatagagaagaactctgcaaaggctgctctaattgcagcaggattgctagcc |
52103605 |
T |
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| Q |
214 |
tctccaggagatccaattgcaattctatggattgccatta |
253 |
Q |
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| T |
52103606 |
tctctaggagacccaattgctattctgtagattgccatta |
52103645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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