View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18809_low_10 (Length: 537)
Name: NF18809_low_10
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 17 - 523
Target Start/End: Complemental strand, 47253393 - 47252887
Alignment:
| Q |
17 |
actttaatagattagtttctgtaaaagaatgaagtaatttctgtatttcaatgcatttaatgttgagaatctattgcagacctcatctttgagtgaatgc |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47253393 |
actttaattgattagtttctgtaaaagaatgaagtaatttctgtatttcaatgcatttaatgttgagaatctattgcagacctcatctttgagtgaatgc |
47253294 |
T |
|
| Q |
117 |
ttgttttacaaatctgctgagttggaggaatgtgttctgattttgcatgatttgtatttggtaagaagggctgcatcattgaaagctgttagggagaaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47253293 |
ttgttttacaaatctgctgagttggaggaatgtgttctgattttgcatgatttgtatttggtaagaagggctgcatcattgaaagctgttagggagaaat |
47253194 |
T |
|
| Q |
217 |
acaagcaacacaaggtgattgttttagcctttctttgttatagttaatatatagctggttcttattattgcaagttgattgacttgaagtgtttgtttga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47253193 |
acaagcaacacaaggtgattgttttagcctttctttgttatagttaatatatagctggttcttattattgcaagttgattgacttgaagtgtttgtttga |
47253094 |
T |
|
| Q |
317 |
aacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaagagtgacaatctaaatcagaaatactgtcttaggg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47253093 |
aacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaagagtgacaatctgaatcagaaatactgtcttaggg |
47252994 |
T |
|
| Q |
417 |
gttaagtggtgtttggcaatcaacttagttagccttaggcaaaatatgtttggtggcttagatacttgaacctggatctctgtgcatatggttacttaat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47252993 |
gttaagtggtgtttggcaatcaacttagttagccttaggcaaaatatgtttggtggcttagatacttgaacctggatctctgtgcatatggttacttaat |
47252894 |
T |
|
| Q |
517 |
tactcat |
523 |
Q |
| |
|
||||||| |
|
|
| T |
47252893 |
tactcat |
47252887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 60 - 383
Target Start/End: Complemental strand, 47242100 - 47241780
Alignment:
| Q |
60 |
tatttcaatgcatttaatgttgagaatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgttctgattt |
159 |
Q |
| |
|
|||||||| | | ||||||||| ||||||||| ||||| ||||| | ||||||| || |||||| || ||||| ||||| ||||||||| |||||| |
|
|
| T |
47242100 |
tatttcaaggtacttaatgttgcgaatctatttcagacttcatccctatgtgaatgtctgggttacaagtcggctgaattggaagaatgtgttatgattt |
47242001 |
T |
|
| Q |
160 |
tgcatgatttgtatttggtaagaagggctgcatcattgaaagctgttagggagaaatacaagcaacacaaggtgattgttttagccttt--------ctt |
251 |
Q |
| |
|
| ||||| ||||||||| ||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||| | ||| || |
|
|
| T |
47242000 |
tacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggagaaatacaagcaacaaaaggtgattgttttaacttttaacatttcatt |
47241901 |
T |
|
| Q |
252 |
tgttatagttaatatatagctggttcttattattgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatct |
351 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| |||||||||| | |||| || |||||||||| ||||||||||||| ||| || |
|
|
| T |
47241900 |
tgttatagttaa-----------ttcttattaatgcaagttggttgacttgaactcattgtctggaacagttcaaatatgtggcaaacctccctagctcg |
47241812 |
T |
|
| Q |
352 |
ccagaaataccaaatcattactttgtagaaga |
383 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||| |
|
|
| T |
47241811 |
ccagagataccaaattattactttgaagaaga |
47241780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 74 - 385
Target Start/End: Complemental strand, 47248535 - 47248227
Alignment:
| Q |
74 |
taatgttgagaatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgttctgattttgcatgatttgtat |
173 |
Q |
| |
|
||||||| |||||||||||||||| | || || ||||||||||| ||||| ||| ||| | || || || |||||| | ||||| |||||||||||| |
|
|
| T |
47248535 |
taatgttcagaatctattgcagactccttccctgtgtgaatgcttgggttacacatcggctaatttagaagattgtgttatcattttacatgatttgtat |
47248436 |
T |
|
| Q |
174 |
ttggtaagaagggctgcatcattgaaagctgttagggagaaatacaagcaacacaaggtgattgttttagcctttctttgttatagttaatatatagctg |
273 |
Q |
| |
|
|| ||||| ||| | ||| || ||||||||| | || ||||||||||| ||||||||||||||||| | ||| || | || | ||||| | |
|
|
| T |
47248435 |
atgtcaagaaaggcaggatccttcaaagctgttcgtgacaaatacaagcagaacaaggtgattgttttaacttttgacaattct--tttgt-tatagtta |
47248339 |
T |
|
| Q |
274 |
gttcttattattgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattact |
373 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | || | || ||||||| || |||||||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
47248338 |
tttcttattattgcaagttcattgacttgaaatcgttttctggaacagttaaaatgtgtggcaaacctgccttcatcgccagagataccaaatcattact |
47248239 |
T |
|
| Q |
374 |
ttgtagaagagt |
385 |
Q |
| |
|
||| | |||||| |
|
|
| T |
47248238 |
ttgaaaaagagt |
47248227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University