View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18809_low_13 (Length: 516)
Name: NF18809_low_13
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 106 - 510
Target Start/End: Original strand, 18661697 - 18662101
Alignment:
| Q |
106 |
ttgtaaatttgcatggattttaacattacgtaccgtttacaggttgttcacggtttgccatccaaacaatattagctgggtcgggactttgattctgcat |
205 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
18661697 |
ttgtaaatttgcatgaattttaacattacgtaccgtttacaggttgttcacggtttgccatccaaacaatattggctgggtcgggactttgattcgtcat |
18661796 |
T |
|
| Q |
206 |
ctctgtgaaccatatggtgaatgaaaatgcgttgtcgccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgt |
305 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18661797 |
ttctgtgaaccatatggcgaatgaaaatgcgttgtcgccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgt |
18661896 |
T |
|
| Q |
306 |
ttctctactgagagagaggatccttttatcaaagatgatacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18661897 |
ttctctactgagagagaggatccttttatcaaagatgatacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgt |
18661996 |
T |
|
| Q |
406 |
aagccattttattagttaattattgttgttgcaattgtaatgtaactatgtaagtatatatagtgtgtatgagtgtatgctttatttgttgaagatgatg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18661997 |
aagccattttattagttaattattgttgttgcaattgcaatgtaactatgtaagtatatatagtgtgtatgagtgtatgctttatttgttgaaggtgatg |
18662096 |
T |
|
| Q |
506 |
tccat |
510 |
Q |
| |
|
||||| |
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|
| T |
18662097 |
tccat |
18662101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 111 - 448
Target Start/End: Original strand, 21132597 - 21132930
Alignment:
| Q |
111 |
aatttgcatggattttaacattacgtaccgtttacaggttgttcacggtttgccatccaaacaatattagctgggtcgggactttgattctgcatctctg |
210 |
Q |
| |
|
|||||||||| ||||||||||||| | || ||||||||||||||||||||||||||||||||||| || |||| |||| |||||||||||||||||| |
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|
| T |
21132597 |
aatttgcatgaattttaacattac----cattcacaggttgttcacggtttgccatccaaacaatattggcggggttgggagtttgattctgcatctctg |
21132692 |
T |
|
| Q |
211 |
tgaaccatatggtgaatgaaaatgcgttgtcgccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctc |
310 |
Q |
| |
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|||||||||||| ||||||||| ||| | ||||| |||||||| ||||||||||| || ||||||||||| |||||||||||||||| ||||||||| |
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| T |
21132693 |
tgaaccatatggcgaatgaaaagctgttattgccaacctgatagaatccagcagagaaagttccctttgaagaaacaattacatcttctgcatgtttctc |
21132792 |
T |
|
| Q |
311 |
tactgagagagaggatccttttatcaaagatgatacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagcc |
410 |
Q |
| |
|
|||||||||||| || |||||| |||||||||||| | || |||||||||||||||||||| || | || || ||||||||||||||| || || || |
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| T |
21132793 |
tactgagagagaagagccttttttcaaagatgataaatgagatgaacattggaagggaaatagaaagaagattaggaaaatatgtgaaattttgaaaacc |
21132892 |
T |
|
| Q |
411 |
attttattagttaattattgttgttgcaattgtaatgt |
448 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||| ||||| |
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|
| T |
21132893 |
atgttattagttaattattgttcttgcaattgcaatgt |
21132930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 106 - 450
Target Start/End: Original strand, 21127261 - 21127607
Alignment:
| Q |
106 |
ttgtaaatttgcat--ggattttaacattacgtaccgtttacaggttgttcacggtttgccatccaaacaatattagctgggtcgggactttgattctgc |
203 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |
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|
| T |
21127261 |
ttgtaaatttgcatatgaattttaacattatgtatcgttcacaggttgttcacggtttgccatccaaacaatattggctgggtcgcgaccgtgattctgc |
21127360 |
T |
|
| Q |
204 |
atctctgtgaaccatatggtgaatgaaaatgcgttgtcgccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtat |
303 |
Q |
| |
|
||||| | |||||||| | ||| ||||| | || || |||| ||||||||| ||||||||||| || ||||||||||| ||| |||||||||||| || |
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|
| T |
21127361 |
atctccgaaaaccatattgcgaaggaaaaggtattttcaccaacttgatagaatccagcagagaaagttccctttgaagaaacagttacatcttctgcat |
21127460 |
T |
|
| Q |
304 |
gtttctctactgagagagaggatccttttatcaaagatgatacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgt |
403 |
Q |
| |
|
||||||||||||||||||| || || ||| |||||||||||| | || |||||||| ||||||||||| || | || || ||||||||||||||| | |
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|
| T |
21127461 |
gtttctctactgagagagaagagccctttttcaaagatgataaatgagatgaacattgaaagggaaatagaaagaagattaggaaaatatgtgaaatttt |
21127560 |
T |
|
| Q |
404 |
gtaagccattttattagttaattattgttgttgcaattgtaatgtaa |
450 |
Q |
| |
|
| || |||| ||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
21127561 |
gaaaaccatgttattagttaattattgttcttgcaattgcaatgtaa |
21127607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 147 - 404
Target Start/End: Original strand, 21119920 - 21120180
Alignment:
| Q |
147 |
ggttgttcacggtttgccatccaaacaatattagctgggtcgggactttgattctgcatctctgtgaaccatatggtgaatgaaaatgcgttgtcgccaa |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| | ||||||||||||||| ||| ||||||||||||| ||| ||||| || || || |||| |
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|
| T |
21119920 |
ggttgttcacggtttgccatccaaacaatattgacggggttgtgactttgattctgcagctcggtgaaccatatggcgaaggaaaaagcattttcaccaa |
21120019 |
T |
|
| Q |
247 |
tttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatgatac |
346 |
Q |
| |
|
||||||| || ||||||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||| |
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|
| T |
21120020 |
tttgataaaaaccagcagagaaagtgccatttgaagagacaattacatcttctgtatgtttctctacagagagagaagatcccttgttcaaagatgatac |
21120119 |
T |
|
| Q |
347 |
agaggaggaac---attggaagggaaatagcaacatgactaccaaaatatgtgaaattgtg |
404 |
Q |
| |
|
||| || |||| ||||||||||||||||||||| ||||| ||||||| ||| |||||| |
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|
| T |
21120120 |
agaagatgaacaatattggaagggaaatagcaacaagactaaaaaaatatatgatattgtg |
21120180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 18661492 - 18661548
Alignment:
| Q |
22 |
gtgtattgttgtaatacatgtagtatttatatcagatttgtaacattgtaaatacta |
78 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||| ||| |||| |||| |
|
|
| T |
18661492 |
gtgtattgttgtaatacatgtaatatttatataagatttgtaagattataaacacta |
18661548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 21127050 - 21127106
Alignment:
| Q |
23 |
tgtattgttgtaatacat-gtagtatttatatcagatttgtaacattgtaaatacta |
78 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| |||||||| |||| |||| |
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|
| T |
21127050 |
tgtattgttgtaatacatcgtagtatttatataagataagtaacattataaaaacta |
21127106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 110 - 450
Target Start/End: Complemental strand, 39120382 - 39120049
Alignment:
| Q |
110 |
aaatttgcatggattttaacattacgtaccgtttacaggttgttcacggtttgccatccaaacaatattagctgggtcgggactttgattctgcatctct |
209 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||| | ||||||||||| |||||||||||| | || |||| | || | ||| ||||| || |
|
|
| T |
39120382 |
aaatttgcatagattttaacat-----accatttacagggttgtcacggtttgctatccaaacaatagtggcggggttgtgagtgtgaggctgcagttca |
39120288 |
T |
|
| Q |
210 |
gtgaaccatatggtgaatgaaaatgcgttgtcgccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttct |
309 |
Q |
| |
|
||||||||||| || ||||| || || || |||| |||| |||||||||| ||||| | || |||||||| |||||||||||||| | || |||| |
|
|
| T |
39120287 |
gtgaaccatattccaaaggaaaaagcattttcaccaacttgaaagaagccagctgagaacattccatttgaagaaacaattacatcttcagcatacttct |
39120188 |
T |
|
| Q |
310 |
ctactgagagagaggatccttttatcaaagatgatacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagc |
409 |
Q |
| |
|
||||||| |||||||| ||||| |||| ||||||| || || ||||||||||||||||||| ||| | ||| |||| || |||||||||| |||| |
|
|
| T |
39120187 |
ctactgaaagagaggaccctttgttcaatgatgataatgaagatgaacattggaagggaaataacaagtaggctaggaaaaaatatgaaattgtgaaagc |
39120088 |
T |
|
| Q |
410 |
cattttattagttaatt-attgttgttgcaattgtaatgtaa |
450 |
Q |
| |
|
|| | |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
39120087 |
ca---tgttagttaattgtttgttgttgcaattgcaatgtaa |
39120049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 450
Target Start/End: Complemental strand, 39130115 - 39129782
Alignment:
| Q |
110 |
aaatttgcatggattttaacattacgtaccgtttacaggttgttcacggtttgccatccaaacaatattagctgggtcgggactttgattctgcatctct |
209 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||| | ||||||||||| ||||||||||| | || |||| | || | ||| ||||| || |
|
|
| T |
39130115 |
aaatttgcatagattttaacat-----accatttacagggttgtcacggtttgctgtccaaacaatagtggcagggttgtgagtgtgaggctgcagttca |
39130021 |
T |
|
| Q |
210 |
gtgaaccatatggtgaatgaaaatgcgttgtcgccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttct |
309 |
Q |
| |
|
||||||||||| || ||||| || || || |||| |||| |||||||||| ||||| | || |||||||| |||||||||||||| | || |||| |
|
|
| T |
39130020 |
gtgaaccatattccaaaggaaaaagcattttcaccaacttgaaagaagccagctgagaacattccatttgaagaaacaattacatcttcagcatacttct |
39129921 |
T |
|
| Q |
310 |
ctactgagagagaggatccttttatcaaagatgatacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagc |
409 |
Q |
| |
|
||||||| |||||||| ||||| |||| ||||||| || || ||||||||||||||||||| ||| | ||| |||| || |||||||||| |||| |
|
|
| T |
39129920 |
ctactgaaagagaggaccctttgttcaatgatgataatgaagatgaacattggaagggaaataacaagtaggctaggaaaaaatatgaaattgtgaaagc |
39129821 |
T |
|
| Q |
410 |
cattttattagttaatt-attgttgttgcaattgtaatgtaa |
450 |
Q |
| |
|
|| | |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
39129820 |
ca---tgttagttaattgtttgttgttgcaattgcaatgtaa |
39129782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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