View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_14 (Length: 502)
Name: NF18809_low_14
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Complemental strand, 29145377 - 29144905
Alignment:
| Q |
16 |
caataaatgcagaaaattaagattggaaaatcctaaacaagtgccaaaaaagaaaacgtatgaagcattgacactggacacgacattgccacttctcatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145377 |
caataaatgcagaaaattaagattggaaaatcctaaacaagtgccaaaaaa-aaaacgtatgaagcattgacactggacacgacattgccacttctcatt |
29145279 |
T |
|
| Q |
116 |
gacaccagtaataatttgagagaatgtaaccacgagtgtcaaatgtgtccgacatgtgttggatatatactagacacaccttcaatttaaagtgtcgatg |
215 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
29145278 |
gacac-agtaataatttgagagaatgtaaccacgagtgtcaaatgtgtccgacatgtgttggata----ctagacacaccttcaatttaaagtgttgatg |
29145184 |
T |
|
| Q |
216 |
ctacgagaaaagaaaactaacctggcttgaggaactcgatttcgatgcagggttggcttcattttgaccaacaacttgatcctttttatcatcaacctta |
315 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145183 |
ctacgagaaaagaaaactaacctggcttgaggagcccgatttcgatgcagggttggcttcattttgaccaacaacttgatcctttttatcatcaacctta |
29145084 |
T |
|
| Q |
316 |
gttaataccaagctagaatcataatctgaagagccatctaaaaaagttgtgtcgctgagcaaagatctagttgaaccatgtggagtaattgagtcagaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145083 |
gttaataccaagctagaatcataatctgaagagccatctaaaaaagttgtgtcgctgagcaaagatctagttgaaccatgtggagtaattgagtcagaat |
29144984 |
T |
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| Q |
416 |
ttggcttaaccaatctccttttcagaatggaatcaattgtcttagaagagtaactgttagtgacattttcctctgtgct |
494 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144983 |
ttggcttaaccaatctccttttcagaatggaatcaatcgtcttagaagagtaactgttagtgacattttcctctgtgct |
29144905 |
T |
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