View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_15 (Length: 500)
Name: NF18809_low_15
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 22 - 484
Target Start/End: Complemental strand, 50386967 - 50386503
Alignment:
| Q |
22 |
ctgttatttccaagtctttttgtgtaccacatatcatcaatacacgacatagaatcaattttaggaacatagtttacaagtggatcaccaaaccctaact |
121 |
Q |
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| T |
50386967 |
ctgtgatttccaagtctttttgtgtaccacatatcatcaatacacgacatagaatcaattttaggaacatggtttacaagtggatcaccaaaccctaact |
50386868 |
T |
|
| Q |
122 |
cagttataacaaccctacactcctttaatttttctcctaatcttgatgtaaacctccatattgattccattagcccaccaagattctctccctctccatg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386867 |
cagttataacaaccctacactcctttaatttttctcctaatcttgatgtaaacctccatattgattccattagcccaccaagattctctccctctccatg |
50386768 |
T |
|
| Q |
222 |
aagtccataaagaaaaagaaaccc-aaatgtactgttgttacacattgagtcaaacattctcaaacaa-ggacatattttgtcctttgcatgatttaatg |
319 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50386767 |
aagtccataaagaaaaagaaacccaaaatgtactgttgttacacattgagtcaaacattctcaaacaagggacatattttgtcctttgcatgatttaatg |
50386668 |
T |
|
| Q |
320 |
tcgcatgaagaaacctaagtggttgaaataattttgttttaacttgaaggttattgtcacaagcttcacaagtattccataaactgaaaatgatccatga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386667 |
tcgcatgaagaaacctaagtggttgaaataattttgttttaacttgaaggttattgtcacaagcttcacaagtattccataaactgaaaatgatccatga |
50386568 |
T |
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| Q |
420 |
tgagcttgttgtacttttatgggtaataatgtcttcaatgttgagtttgaagccttcatctttgt |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386567 |
tgagcttgttgtacttttatgggtaataatgtcttcaatgttgagtttgaagccttcatctttgt |
50386503 |
T |
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