View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18809_low_16 (Length: 498)

Name: NF18809_low_16
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18809_low_16
NF18809_low_16
[»] chr2 (9 HSPs)
chr2 (9-420)||(18986854-18987265)
chr2 (67-355)||(24786502-24786790)
chr2 (415-498)||(18987467-18987550)
chr2 (48-233)||(23655921-23656106)
chr2 (11-118)||(44585938-44586041)
chr2 (300-347)||(44586173-44586220)
chr2 (241-347)||(32251845-32251953)
chr2 (167-233)||(44586040-44586106)
chr2 (291-347)||(23656164-23656220)
[»] chr3 (21 HSPs)
chr3 (10-419)||(27869941-27870350)
chr3 (48-350)||(21975551-21975854)
chr3 (48-350)||(21997982-21998285)
chr3 (48-348)||(16359045-16359347)
chr3 (111-347)||(5943487-5943723)
chr3 (74-314)||(22924251-22924491)
chr3 (11-347)||(14481056-14481387)
chr3 (11-233)||(13928684-13928903)
chr3 (56-355)||(19185209-19185507)
chr3 (82-350)||(22160146-22160415)
chr3 (11-263)||(13926286-13926535)
chr3 (12-347)||(17791238-17791569)
chr3 (12-347)||(19099678-19100009)
chr3 (415-496)||(27870553-27870634)
chr3 (268-419)||(16642571-16642729)
chr3 (268-419)||(4712483-4712641)
chr3 (99-147)||(14054601-14054649)
chr3 (48-147)||(16642814-16642913)
chr3 (373-419)||(14054847-14054893)
chr3 (361-419)||(14062564-14062622)
chr3 (99-147)||(4712350-4712398)
[»] scaffold0094 (2 HSPs)
scaffold0094 (9-419)||(4127-4540)
scaffold0094 (415-498)||(4742-4825)
[»] chr6 (11 HSPs)
chr6 (11-416)||(19546767-19547175)
chr6 (48-355)||(8403258-8403570)
chr6 (11-228)||(7682035-7682248)
chr6 (48-347)||(9191393-9191686)
chr6 (78-355)||(14970421-14970698)
chr6 (14-355)||(10906165-10906500)
chr6 (415-498)||(19547381-19547464)
chr6 (268-416)||(14989058-14989213)
chr6 (268-419)||(14979946-14980104)
chr6 (99-147)||(14979813-14979861)
chr6 (99-147)||(14988925-14988973)
[»] chr4 (11 HSPs)
chr4 (11-419)||(18556343-18556753)
chr4 (11-419)||(11097824-11098236)
chr4 (48-348)||(15872314-15872616)
chr4 (48-348)||(15889906-15890208)
chr4 (48-355)||(12229238-12229546)
chr4 (48-233)||(11556395-11556580)
chr4 (69-233)||(18220279-18220443)
chr4 (48-347)||(16284496-16284796)
chr4 (47-226)||(30275514-30275693)
chr4 (415-498)||(18556956-18557039)
chr4 (295-347)||(18231190-18231242)
[»] scaffold0290 (3 HSPs)
scaffold0290 (247-419)||(13772-13944)
scaffold0290 (37-151)||(13649-13763)
scaffold0290 (415-498)||(14146-14229)
[»] chr7 (9 HSPs)
chr7 (48-355)||(13477125-13477432)
chr7 (14-354)||(20026330-20026666)
chr7 (120-350)||(37945357-37945587)
chr7 (48-163)||(22614568-22614683)
chr7 (67-233)||(4531253-4531419)
chr7 (268-419)||(16060786-16060945)
chr7 (48-163)||(11655650-11655759)
chr7 (268-344)||(48377172-48377248)
chr7 (99-147)||(48377331-48377379)
[»] chr5 (7 HSPs)
chr5 (11-233)||(13937394-13937614)
chr5 (11-228)||(24831455-24831668)
chr5 (48-263)||(24759208-24759423)
chr5 (48-350)||(23960375-23960682)
chr5 (281-355)||(17458283-17458356)
chr5 (71-147)||(17458485-17458561)
chr5 (291-350)||(13936063-13936122)
[»] scaffold1001 (1 HSPs)
scaffold1001 (11-183)||(1544-1712)
[»] scaffold0166 (1 HSPs)
scaffold0166 (48-263)||(1702-1917)
[»] scaffold0385 (1 HSPs)
scaffold0385 (73-345)||(14575-14848)
[»] scaffold0118 (1 HSPs)
scaffold0118 (56-332)||(10463-10740)
[»] chr8 (2 HSPs)
chr8 (67-347)||(29294217-29294497)
chr8 (98-147)||(23659051-23659100)
[»] scaffold0737 (1 HSPs)
scaffold0737 (72-347)||(3155-3430)
[»] scaffold0145 (1 HSPs)
scaffold0145 (11-347)||(12921-13254)
[»] scaffold0003 (1 HSPs)
scaffold0003 (241-419)||(131056-131240)
[»] scaffold0048 (2 HSPs)
scaffold0048 (99-163)||(52635-52699)
scaffold0048 (110-163)||(87134-87187)
[»] chr1 (3 HSPs)
chr1 (268-419)||(13881940-13882098)
chr1 (48-147)||(13881756-13881855)
chr1 (48-147)||(51626492-51626591)
[»] scaffold1269 (2 HSPs)
scaffold1269 (361-419)||(252-310)
scaffold1269 (99-147)||(494-542)
[»] scaffold0091 (2 HSPs)
scaffold0091 (268-419)||(29331-29490)
scaffold0091 (99-147)||(29575-29623)
[»] scaffold0319 (1 HSPs)
scaffold0319 (99-147)||(13120-13168)


Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 18986854 - 18987265
Alignment:
Q  9 gagatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatga 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||||||||    
T  18986854 gagatgaataagatgggaatcaattagaagagataaattaagatgaataaggaatcaaataagaggtaatagttataatctttgacgataataataatga 18986953  T
Q  109 ccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagatt 208  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18986954 ccggtatcgagagaataaaaccttgaataataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagatt 18987053  T
Q  209 agaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagt 308  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  18987054 agaacgaggttcagattaggagaatagttgacgtataaatgactatgaatgtgaggacgaagtaataagatgtaaagtcacgttaatgagaagaataagt 18987153  T
Q  309 atgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgaggaa 408  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18987154 atgaaggagttaatgatgatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaatatgtaaacaacttaagaccaagattgaggaa 18987253  T
Q  409 tatggtatgatg 420  Q
    ||||||||||||    
T  18987254 tatggtatgatg 18987265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 67 - 355
Target Start/End: Complemental strand, 24786790 - 24786502
Alignment:
Q  67 ataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttag 166  Q
    ||||||| |||||||||||||  |||| |||||||||||| ||  | ||||||||||| |||||||| ||||||||  |||||| |||||| || ||       
T  24786790 ataagagttaatagttataatggttgacgataataataataactagaatcgagagaatgaaaccttggattataatatagtcttagtgaggaaacttgtt 24786691  T
Q  167 gaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggca 266  Q
    |||||||||| ||||||  ||||| |||||||||| || |||||||||| ||| |||||||| |||| |  || | ||||||||| | |||  ||||       
T  24786690 gaagtcgaaattaatgataaggtgagataataactataaattagaacgaagttaagattaggggaatgggcgatgcataaatgactacgaacatgagaac 24786591  T
Q  267 aaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagag 355  Q
    ||||||||||||  ||||||    ||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  24786590 aaagtaataagagataaagttgttttattgagaagaataagtatgaaggagttaatgacgatggtgaggtaggacctagttgtaaagag 24786502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 415 - 498
Target Start/End: Original strand, 18987467 - 18987550
Alignment:
Q  415 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatga 498  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  18987467 atgatgagtaatgttatgtaaacttataagtatgtgcggtgaaagttgatgaggtctatatcataaagatgctgagagtgatga 18987550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 23655921 - 23656106
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    |||||||||||||||    ||||| ||||| |||||||||  |||| |||||||||||||||  ||||||||||||| |||| ||||||||||||| |||    
T  23655921 aagatgaataggaaaaaggataagtggtaacagttataatggttgacgataataataatgactagtatcgagagaatgaaacattgaattataatgtagt 23656020  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaat 233  Q
    ||| |||| | |||||   |||||||| | |||| |  ||||| |||||| |||||| ||||||| || ||| |||||||| ||||    
T  23656021 cttagtgaagaaagttgttgaagtcgagattaataataaggtgagataattactttaaattagaatgaagttaagattaggggaat 23656106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 44585938 - 44586041
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacc 110  Q
    ||||||||| ||||| |||||||||||||| ||||    |||||||||||||    |||||||||||||||||||||  |||| ||||||||||| |||     
T  44585938 gatgaataaaatggggatcaattagaagagggaaa----gatgaataggaaataggataagaggtaatagttataatggttgacgataataataacgact 44586033  T
Q  111 ggtatcga 118  Q
     |||||||    
T  44586034 agtatcga 44586041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 44586173 - 44586220
Alignment:
Q  300 agaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  44586173 agaataagtatgaaagagttaatggcaatggtgaggaagaacctagtt 44586220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 32251845 - 32251953
Alignment:
Q  241 gtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacg--ttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtag 338  Q
    ||||||||||||| ||||| |||    |||||||||||| |||| || |   ||||||||||||||||| ||||| |||||||||| ||| |||||| ||    
T  32251845 gtataaatgacgacgaatgcgagaacgaagtaataagatataaattctctctttaatgagaagaataagcatgaaagagttaatgataatagtgaggaag 32251944  T
Q  339 aacctagtt 347  Q
    || ||||||    
T  32251945 aatctagtt 32251953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 44586040 - 44586106
Alignment:
Q  167 gaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaat 233  Q
    ||||| |||| |||||| |||||| ||||||||||||| ||||||| || ||| |||||||| ||||    
T  44586040 gaagttgaaattaatgatgaggtgagataataactttaaattagaatgaagttaagattaggggaat 44586106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 23656164 - 23656220
Alignment:
Q  291 ttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    ||| |||| |||||||||||||| || |||||| ||| ||||||| |||||||||||    
T  23656164 ttattgaggagaataagtatgaaagacttaatggcaacggtgaggaagaacctagtt 23656220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 419
Target Start/End: Original strand, 27869941 - 27870350
Alignment:
Q  10 agatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgac 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||| |||||||||||| ||    
T  27869941 agatgaataagatgggaatcgattagaagagagaaattaagatgaataggaaaccagataagaggtaatagtgataatgtttgacgataataataataac 27870040  T
Q  110 cggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagatta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||    
T  27870041 cggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaaatttatgaagttgaaagtaattacgaggtgcgataataactttagatta 27870140  T
Q  210 gaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagta 309  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||| | |||||||||||||||| ||||    
T  27870141 gaacgaggtttagattaggagaatggttgacgtataaatgacgatgaatgtgaggacgaagtaataagatgtaaaggcgcgttaatgagaagaattagta 27870240  T
Q  310 tgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgaggaat 409  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  27870241 tgaaggagttaatgacggtggtgaggtagaacctagttgtaaagagaggagatgttatgataacgaataagtaaacaacttaagactaagaatgaggaat 27870340  T
Q  410 atggtatgat 419  Q
    ||||||||||    
T  27870341 atggtatgat 27870350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 48 - 350
Target Start/End: Complemental strand, 21975854 - 21975551
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| |||||||||  ||||| |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||  |||     
T  21975854 aagatgagtaggaaagcggataagcggtaataaatataatgtttgatgataataataacaaccggtatcgagagaataaaatcttgaattataaataagc 21975755  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    ||| |||||| ||||||  |||||| | |||| |||  | ||| |||||||| |||| ||||| |  | ||| |||||||||||||||| || ||||| |    
T  21975754 cttagtgaggaaagtttctgaagtcaagagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtataga 21975655  T
Q  248 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 346  Q
    |||||| |||||||||   || |||||||||| ||||||||  || ||| | |||||||| || ||| ||||||||||| |||||| || |||||||||     
T  21975654 tgacgacgaatgtgagaacaaggtaataagatataaagtcattttaaattaaaagaataattacgaaagagttaatgacgatggtggggaagaacctagg 21975555  T
Q  347 tgta 350  Q
    ||||    
T  21975554 tgta 21975551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 48 - 350
Target Start/End: Complemental strand, 21998285 - 21997982
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| |||||||||  ||||| |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||  |||     
T  21998285 aagatgagtaggaaagcggataagcggtaataaatataatgtttgatgataataataacaaccggtatcgagagaataaaatcttgaattataaataagc 21998186  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    ||| |||||| ||||||  |||||| | |||| |||  | ||| |||||||| |||| ||||| |  | ||| |||||||||||||||| || ||||| |    
T  21998185 cttagtgaggaaagtttctgaagtcaagagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtataga 21998086  T
Q  248 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 346  Q
    |||||| |||||||||   || |||||||||| ||||||||  || ||| | |||||||| || ||| ||||||||||| |||||| || |||||||||     
T  21998085 tgacgacgaatgtgagaacaaggtaataagatataaagtcattttaaattaaaagaataattacgaaagagttaatgacgatggtggggaagaacctagg 21997986  T
Q  347 tgta 350  Q
    ||||    
T  21997985 tgta 21997982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 48 - 348
Target Start/End: Original strand, 16359045 - 16359347
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| |||||||||  ||||| | ||||||||||||  ||||| |||||||||||  ||||| ||||||||||||||| ||||||||||||||||||    
T  16359045 aagatgagtaggaaagcggataagcgataatagttataaagtttgacgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagt 16359144  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    ||| |||||| ||||||  || ||| |||||| |||     || ||||||||||||| ||||| |  | ||| |||||||||||||||| || ||||| |    
T  16359145 cttagtgaggaaagtttctgatgtcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtataga 16359244  T
Q  248 tgacgatgaatgtgaggcaaaagtaataaga-tgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctag 345  Q
    |||||| |||||||||   || ||||||||| | |||||||   || |||||||||||||| || ||| ||||||||||| |||||| || |||||||||    
T  16359245 tgacgacgaatgtgagaacaaggtaataagattataaagtcgtattaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctag 16359344  T
Q  346 ttg 348  Q
    |||    
T  16359345 ttg 16359347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 111 - 347
Target Start/End: Original strand, 5943487 - 5943723
Alignment:
Q  111 ggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattag 210  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | |||||   ||||| ||| |||||||  ||||| |||||||| || | |||||    
T  5943487 ggtatcgagagaataaaaccttgaattataatgaagtcgtagtgacgaaagttattgaagttgaaggtaatgataaggtgtgataataatttcaaattag 5943586  T
Q  211 aacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtat 310  Q
    ||| |  || ||||||||||||| ||  | ||||| ||||||| |||||||||    |  ||||||||| ||||||| | |||||||||||||||||| |    
T  5943587 aacaaaattaagattaggagaatggtcaatgtatagatgacgaggaatgtgagaatgagataataagatataaagtcgctttaatgagaagaataagttt 5943686  T
Q  311 gaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    ||| ||||||||||||||||||||| |||||| ||||    
T  5943687 gaaagagttaatgacaatggtgaggaagaaccaagtt 5943723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 74 - 314
Target Start/End: Complemental strand, 22924491 - 22924251
Alignment:
Q  74 gtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcg 173  Q
    |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||  |||| ||||||||| ||||||| |||||| |||||   |||||||    
T  22924491 gtaatagttataatgtttgacgataataataaagaccgatatcgagagaataactccttaaattataataaagtcttagtgaggaaagttgttgaagtcg 22924392  T
Q  174 aaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaa 273  Q
    |||||||  |  || || ||||||||||||| | ||||| || ||| || |||  |||||  | || ||||| ||||||| |||||||||   |||||||    
T  22924391 aaagtaactataagatgagataataactttaaaatagaatgaagttaagtttaatagaatgatcgatgtatatatgacgacgaatgtgagaacaaagtaa 22924292  T
Q  274 taagatgtaaagtcacgttaatgagaagaataagtatgaag 314  Q
    |||||| ||||||||| |||||| |||||||||||||||||    
T  22924291 taagatataaagtcactttaatgggaagaataagtatgaag 22924251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 14481056 - 14481387
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacc 110  Q
    ||||||||| ||||  ||| |||||||||||||||    ||||||| ||||||   |||||||||||||||||||||  |||| |||||||||||||||     
T  14481056 gatgaataaaatggagatctattagaagagagaaa----gatgaatgggaaagaggataagaggtaatagttataatggttgacgataataataatgact 14481151  T
Q  111 ggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattag 210  Q
     |||||||||||||||||||||||||||||||| |||||| |||||| |||||   |||||| ||| ||||||  ||||| || | |||||||| |||||    
T  14481152 agtatcgagagaataaaaccttgaattataatgtagtcttagtgaggaaagttgttgaagtcaaaattaatgataaggtgagacagtaactttaaattag 14481251  T
Q  211 aacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtat 310  Q
    ||||  ||| ||||||||  ||| |  || |  || ||||| | |||  ||||   ||||||||||||| | |||  || ||| |||| || ||||||||    
T  14481252 aacggagttaagattagggaaatggacgatgcctagatgactacgaacatgagaacaaagtaataagatat-aagatactttattgaggaggataagtat 14481350  T
Q  311 gaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    ||| |||||||||| ||||| |||| |||||||||||    
T  14481351 gaaagagttaatgaaaatggagagggagaacctagtt 14481387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 13928684 - 13928903
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacc 110  Q
    ||||||||||| |||||||||||||||||||||||    |||||||||||| | | ||||||||||||||||||||| ||||| |||||  |||| ||||    
T  13928684 gatgaataagacgggaatcaattagaagagagaaa----gatgaataggaaggaagataagaggtaatagttataatatttgacgataaatataacgacc 13928779  T
Q  111 ggtatcgagagaataaaacctt-gaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagatta 209  Q
    ||||||||||||||||  ||||  ||||||||||||||||||| |||| |||||   |||||||||||||| ||  || || | ||||||||||| | ||    
T  13928780 ggtatcgagagaataactccttaaaattataatgaagtcttggcgaggaaagttgctgaagtcgaaagtaaagataagatggggtaataactttaaaata 13928879  T
Q  210 gaacgaggtttagattaggagaat 233  Q
    ||| || ||| || ||||||||||    
T  13928880 gaatgaagttaaggttaggagaat 13928903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 355
Target Start/End: Complemental strand, 19185507 - 19185209
Alignment:
Q  56 taggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtga 155  Q
    |||||||||  ||||| ||||||||||||||| ||||| |||||||||||  || ||||| |||||||||||| |||||||| |||||||||||| ||||    
T  19185507 taggaaagcggataagcggtaatagttataatgtttgacgataataataacaactggtattgagagaataaaatcttgaattgtaatgaagtcttagtga 19185408  T
Q  156 gggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatg 255  Q
    || ||||||   ||||| |||||| |||  |  || ||||||||||| | ||||| |  | ||| |||||||||||||||| || ||||| |||||   |    
T  19185407 ggaaagtttctaaagtcaaaagtactgataaaatgagataataacttcaaattaggattaagttaagattaggagaatagtcgatgtatagatgacagcg 19185308  T
Q  256 aatgtgaggcaaaagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaaga 354  Q
    ||||||||   || |||||||||| ||||||    || |||||||||||||| || |||  |||||||||  |||||| |  |||||||||||||| |||    
T  19185307 aatgtgagaacaaggtaataagatataaagttgttttaaatgagaagaataattacgaa--agttaatgatgatggtgggtaagaacctagttgtataga 19185210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 350
Target Start/End: Complemental strand, 22160415 - 22160146
Alignment:
Q  82 tataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaat 181  Q
    |||||| ||||| |||||||||||  ||||||||||||||||||||| || |||||||||  ||| ||| |||||  ||||||  |||||| | |||| |    
T  22160415 tataatgtttgacgataataataacaaccggtatcgagagaataaaatctagaattataaataagccttagtgagaaaagtttctgaagtcaagagtatt 22160316  T
Q  182 gacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgt 281  Q
    ||  | ||| |||||||| |||| ||||| |  | ||| |||||||||||||||| || ||||| ||||||| |||||||||   || |||||||||| |    
T  22160315 gataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagatat 22160216  T
Q  282 aaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgta 350  Q
    |||||||  || ||| | |||||||| || ||| ||||||||||| |||||| || ||||||||| ||||    
T  22160215 aaagtcattttaaattataagaataattacgaaagagttaatgacgatggtggggaagaacctaggtgta 22160146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 13926286 - 13926535
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacc 110  Q
    ||||||||||| |||||||||||||||||||| ||    ||| ||||||||   | ||||||||||||||||||||| ||||| |||||  |||| ||||    
T  13926286 gatgaataagacgggaatcaattagaagagagcaa----gataaataggaagtaagataagaggtaatagttataatatttgacgataaatataacgacc 13926381  T
Q  111 ggtatcgagagaataaaacctt-gaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagatta 209  Q
    | ||||| ||||||||  ||||  ||||||||||||||||| | |||| |||||   |||||| ||||||| ||  || || | ||||||||||| | ||    
T  13926382 gatatcgtgagaataactccttaaaattataatgaagtcttagcgaggaaagttgctgaagtcaaaagtaacgataagatggggtaataactttaaaata 13926481  T
Q  210 gaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgag 263  Q
    ||| || ||| || ||| |||||   | ||  |||| |||||||||||||||||    
T  13926482 gaatgaagttaaggttaagagaaggatcgatatatagatgacgatgaatgtgag 13926535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 17791569 - 17791238
Alignment:
Q  12 atgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccg 111  Q
    |||||||| ||||| ||| ||||||||||||     ||||||||||||| ||   || |||| ||||||||||||   |||| ||||||||||| |||      
T  17791569 atgaataaaatggggatcgattagaagagag----caagatgaataggagagaggatgagagataatagttataacgattgacgataataataacgacta 17791474  T
Q  112 gtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattaga 211  Q
    |||||||  |||| || ||||||||| ||||  |||||| |  ||| |||||   |||||||||| ||||||  ||||| ||||| ||||||| ||||||    
T  17791473 gtatcgaaggaatgaacccttgaattgtaatatagtcttagctaggaaagttgctgaagtcgaaactaatgataaggtgagataacaactttaaattaga 17791374  T
Q  212 acgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtca-cgttaatgagaagaataagtat 310  Q
    || | ||| ||||||||  ||| |  || | ||||||||| | |||  ||||   |||| |||||||| | ||| ||   ||| |||| || ||||||||    
T  17791373 acaaagttaagattagggaaatggacgatgcataaatgactacgaacatgagaacaaagaaataagatat-aagacagttttattgaggaggataagtat 17791275  T
Q  311 gaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    ||| ||||||||||||||||||||| |||||||||||    
T  17791274 gaaagagttaatgacaatggtgaggaagaacctagtt 17791238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 19100009 - 19099678
Alignment:
Q  12 atgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccg 111  Q
    |||||||| ||||| ||| ||||||||||||     ||||||||||||| ||   || |||| ||||||||||||   |||| ||||||||||| |||      
T  19100009 atgaataaaatggggatcgattagaagagag----caagatgaataggagagaggatgagagataatagttataacgattgacgataataataacgacta 19099914  T
Q  112 gtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattaga 211  Q
    |||||||  |||| || ||||||||| ||||  |||||| |  ||| |||||   |||||||||| ||||||  ||||| ||||| ||||||| ||||||    
T  19099913 gtatcgaaggaatgaacccttgaattgtaatatagtcttagctaggaaagttgctgaagtcgaaactaatgataaggtgagataacaactttaaattaga 19099814  T
Q  212 acgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtca-cgttaatgagaagaataagtat 310  Q
    || | ||| ||||||||  ||| |  || | ||||||||| | |||  ||||   |||| |||||||| | ||| ||   ||| |||| || ||||||||    
T  19099813 acaaagttaagattagggaaatggacgatgcataaatgactacgaacatgagaacaaagaaataagatat-aagacagttttattgaggaggataagtat 19099715  T
Q  311 gaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    ||| ||||||||||||||||||||| |||||||||||    
T  19099714 gaaagagttaatgacaatggtgaggaagaacctagtt 19099678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 496
Target Start/End: Original strand, 27870553 - 27870634
Alignment:
Q  415 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgat 496  Q
    ||||||||||||||||||||||||||||| || |  || | |||||  ||||||||||||||||||||||| ||||||||||    
T  27870553 atgatgagtaatgttatgtaaacttataaatatgttcgatgaaagtcgatgaggtctatatcataaagatgttgagagtgat 27870634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 419
Target Start/End: Complemental strand, 16642729 - 16642571
Alignment:
Q  268 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtaga------ 361  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||| | |||          
T  16642729 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagactttgc 16642630  T
Q  362 -tgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 419  Q
     ||| |||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  16642629 atgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatatggtatgat 16642571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 419
Target Start/End: Original strand, 4712483 - 4712641
Alignment:
Q  268 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtag------- 360  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||  | ||           
T  4712483 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagaacgaagattttgc 4712582  T
Q  361 atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 419  Q
    |||| |||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||    
T  4712583 atgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgat 4712641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 14054601 - 14054649
Alignment:
Q  99 ataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    |||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  14054601 ataataatgaccggtatcaagagaatgaaacctcgaattataatgaagt 14054649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 16642913 - 16642814
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    |||||| |||||||||   |||||||||| ||||| ||||   ||| ||  ||||||| |||||||||| ||||||| |||||| |||||||||||||||    
T  16642913 aagatgcataggaaagaggataagaggtagtagttgtaatgagtgacgaatataataacgaccggtatcaagagaatgaaacctcgaattataatgaagt 16642814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 14054847 - 14054893
Alignment:
Q  373 cgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 419  Q
    |||||||| ||||||||| ||||||||| ||| ||||||||||||||    
T  14054847 cgaataagaaaacaacttgagaccaagaatgaagaatatggtatgat 14054893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 14062564 - 14062622
Alignment:
Q  361 atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 419  Q
    |||| |||||| |||||||| ||| ||||| ||||||||| |||||||||||| |||||    
T  14062564 atgtaatgatagcgaataagaaaaaaacttgagaccaagaatgaggaatatggcatgat 14062622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 4712350 - 4712398
Alignment:
Q  99 ataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| |||||||||| || |||| |||||| |||||||||||||||    
T  4712350 ataataacgaccggtatcaagtgaatgaaacctcgaattataatgaagt 4712398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 4127 - 4540
Alignment:
Q  9 gagatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaa----ataagaggtaatagttataatctttgatgataataata 104  Q
    |||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||    | |||||||| |||||||||| ||||| ||||||||||    
T  4127 gagatgaataagatggcaatcgattagaagagagcaattaagatgaataggaaagaaagaagagaagaggtagtagttataatgtttgacgataataata 4226  T
Q  105 atgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataacttta 204  Q
    |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||||||||||||||||    
T  4227 atgactagtatcgagagaatgaaaccttgaattataatgaagtcttggtgagggaagtttatgaagtcgaaagtaatgatcaagtgcgataataacttta 4326  T
Q  205 gattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaat 304  Q
     ||||||| |||||| | ||||||||||| ||| ||||||| |||||||| |||||||||   ||||||||||||||||||   | |||||||| | |||    
T  4327 aattagaatgaggttcaaattaggagaatggtttacgtatagatgacgatcaatgtgaggacgaagtaataagatgtaaaggtgcattaatgag-ataat 4425  T
Q  305 aagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattga 404  Q
    | ||||||||||||||||||| ||||| ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |||| |||    
T  4426 atgtatgaaggagttaatgacgatggttaggtagaacctagttgtaaagggaggagatgttatgataacgaataagtaaacaacttaagactaagaatga 4525  T
Q  405 ggaatatggtatgat 419  Q
    |||||||||||||||    
T  4526 ggaatatggtatgat 4540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 415 - 498
Target Start/End: Original strand, 4742 - 4825
Alignment:
Q  415 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatga 498  Q
    ||||||||||||||||||||||| ||||| |||   || | |||||| ||||||||| ||||||||||||| ||||||||||||    
T  4742 atgatgagtaatgttatgtaaacctataaatacattcgatgaaagttgatgaggtctgtatcataaagatgatgagagtgatga 4825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 19546767 - 19547175
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaa----ataagaggtaatagttataatctttgatgataataataat 106  Q
    ||||| ||||||| ||||| |||||||||||  |||||||||||||||||||| ||    ||||||||||||||||||||| ||||| ||||||||||||    
T  19546767 gatgagtaagatgagaatcgattagaagagaccaattaagatgaataggaaagaaagcagataagaggtaatagttataatgtttgacgataataataat 19546866  T
Q  107 gaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttaga 206  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| |    
T  19546867 gactggtatcgagagaatgaaaccttgaattataatgaagtcttggtgagggaagtttatgaagtcgaaagtaatgattaagtgcgataataactttaaa 19546966  T
Q  207 ttagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataa 306  Q
    ||||||||||||| ||||||||||||| ||| ||||||| |||||| | |||||||||   ||||||||| ||||||||     |||||||| | ||||     
T  19546967 ttagaacgaggttcagattaggagaatggtttacgtatagatgacggtcaatgtgaggacgaagtaataaaatgtaaaggtgaattaatgag-ataatat 19547065  T
Q  307 gtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgagg 406  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||||||| |||| ||||     
T  19547066 gtatgaaggagttaatgacgatggttaggtagaacctatttgtaaagggaggagatgttatgataacgaataagtaaacaacttaagactaagaatgaga 19547165  T
Q  407 aatatggtat 416  Q
    ||||||||||    
T  19547166 aatatggtat 19547175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 48 - 355
Target Start/End: Original strand, 8403258 - 8403570
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| |||||||||  ||||| ||||||||||||||| |||||  ||||| ||||  ||||||||| ||||||||||| |||||||||| ||||||     
T  8403258 aagatgagtaggaaagcggataagcggtaatagttataatgtttgacaataatgataacaaccggtatcaagagaataaaatcttgaattatgatgaagc 8403357  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    ||| |||||| ||||||  |||||| |||||| |||  | ||| ||||||||||||| ||||| |  | ||| |||||||||||||||| || ||||| |    
T  8403358 cttagtgaggaaagtttctgaagtcaaaagtactgataaagtgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtataga 8403457  T
Q  248 tgacgatgaatgtgag-gcaa---aagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacc 342  Q
    |||||| |||||||||  |||   || ||||||||| ||||||    || |||||||||||||| || ||| ||||||||||| |||||| || ||||||    
T  8403458 tgacgacgaatgtgagaacaagataattaataagatataaagtagttttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacc 8403557  T
Q  343 tagttgtaaagag 355  Q
    |||||||| ||||    
T  8403558 tagttgtatagag 8403570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 7682035 - 7682248
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacc 110  Q
    ||||||||| ||||| ||| ||||||||||||    |||||||||||||||||   |||||||||||||||||||||  |||| | |||||||||||||     
T  7682035 gatgaataaaatggggatcgattagaagagag----taagatgaataggaaagaggataagaggtaatagttataatgattgacgttaataataatgact 7682130  T
Q  111 ggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattag 210  Q
     |||||||||||||||||||||||||||||||| |||||| |||||| |||||   |||||| ||| ||||||  ||||   ||| |||||||| |||||    
T  7682131 agtatcgagagaataaaaccttgaattataatgtagtcttagtgaggaaagttgttgaagtcaaaattaatgataaggtaacatagtaactttaaattag 7682230  T
Q  211 aacgaggtttagattagg 228  Q
    ||||  ||| ||||||||    
T  7682231 aacggagttaagattagg 7682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 48 - 347
Target Start/End: Complemental strand, 9191686 - 9191393
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||||||||||||   ||||||| || |||||||||  || |  ||| |||||||  |||||||||||||||| ||||||||||||||||| |||||    
T  9191686 aagatgaataggaaagaggataagagatattagttataaggttagtcgatgataataacaaccggtatcgagagaacaaaaccttgaattataacgaagt 9191587  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    | | |||||| |||||   ||||      || ||||  ||||| ||| |||| |||| ||||||| || ||| ||||||||||||| || || ||||| |    
T  9191586 cgtagtgaggaaagttgctgaag------gtgatgataaggtgagattataattttaaattagaatgaagttaagattaggagaatggtcgatgtataca 9191493  T
Q  248 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    || ||| ||| |||||    | |||||||||| |||||| || ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  9191492 tggcgacgaaagtgagaacgaggtaataagatataaagtaactttaatgagaggaataagtatgaaagagttaatgacaatggtgaggaagaacctagtt 9191393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 355
Target Start/End: Complemental strand, 14970698 - 14970421
Alignment:
Q  78 tagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaag 177  Q
    |||||||||  || || ||| ||||||||||||| | || |||||||||| || |||||||||||| |||| | |||||| |||||   |||||| |||     
T  14970698 tagttataaggttagacgatgataataatgaccgatgtcaagagaataaagccatgaattataatggagtcgtagtgaggaaagttgttgaagtcaaaat 14970599  T
Q  178 taatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataag 277  Q
    ||||||   |||| |||||||||| || |||||| | |  || |||  ||| |||| |  || | ||| ||||| | |||  ||||   |||||||||||    
T  14970598 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 14970499  T
Q  278 atgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagag 355  Q
    || || |||    ||| ||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||    
T  14970498 atatacagtggttttattgagaagaataagtatgaaggagttaatgacgatggtgaagtagtatctagttgtaaagag 14970421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 10906165 - 10906500
Alignment:
Q  14 gaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggt 113  Q
    |||| ||||||||||| |||| |||||||     ||||| ||||||||||   ||||||| || |||||||||  || || ||| ||||||| || | ||    
T  10906165 gaatcagatgggaatcgattaaaagagag----caagattaataggaaagaggataagagatattagttataaggttagacgatgataataacgatcagt 10906260  T
Q  114 atcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaac 213  Q
    ||||||||||||||||||||||||| |||| |||||| |||||  |||||   || || ||  |||||||  |||||  || ||||||||| |||||||     
T  10906261 atcgagagaataaaaccttgaattaaaatggagtcttagtgagtaaagttgctgacgttgagggtaatgataaggtgatatgataactttaaattagaat 10906360  T
Q  214 gaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaa 313  Q
     | ||| ||| ||||||||| || |  ||||| |||||||  ||||||||    | |||||||||| | || || |  | ||||| ||||||||||||||    
T  10906361 caagttaagagtaggagaat-gtcggtgtatagatgacgacaaatgtgagaacgaggtaataagatat-aattcgctctgatgaggagaataagtatgaa 10906458  T
Q  314 ggagttaatgacaatggtgaggtagaacctagttgtaaagag 355  Q
     ||||||| ||| ||||||||| || | ||||||||| ||||    
T  10906459 agagttaacgacgatggtgaggaaggatctagttgtatagag 10906500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 498
Target Start/End: Original strand, 19547381 - 19547464
Alignment:
Q  415 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatga 498  Q
    ||||||||||||||||||||||| ||||| |||| ||  | |||||| ||||||| | |||||||||||||  |||||||||||    
T  19547381 atgatgagtaatgttatgtaaacctataaatacgggcaatgaaagttgatgaggtttgtatcataaagatgaagagagtgatga 19547464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 416
Target Start/End: Original strand, 14989058 - 14989213
Alignment:
Q  268 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtaga------ 361  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||| | |||          
T  14989058 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagactttgc 14989157  T
Q  362 -tgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtat 416  Q
     ||| ||||||||||||||| ||||||||| || |||||| |||||||| ||||||    
T  14989158 atgtaatgataacgaataagaaaacaacttgaggccaagaatgaggaatttggtat 14989213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 419
Target Start/End: Original strand, 14979946 - 14980104
Alignment:
Q  268 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtag------- 360  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||  | ||           
T  14979946 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagaacgaagattttgc 14980045  T
Q  361 atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 419  Q
    |||| |||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||    
T  14980046 atgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgat 14980104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 14979813 - 14979861
Alignment:
Q  99 ataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| |||||||||| || |||| |||||| |||||||||||||||    
T  14979813 ataataacgaccggtatcaagtgaatgaaacctcgaattataatgaagt 14979861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 14988925 - 14988973
Alignment:
Q  99 ataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| ||| |||||| ||||||| |||||| |||||||||||||||    
T  14988925 ataataacgactggtatcaagagaatgaaacctcgaattataatgaagt 14988973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 18556343 - 18556753
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaa----ataagaggtaatagttataatctttgatgataataataat 106  Q
    ||||| ||||||||||||| |||||||||||  |||||||||||||||||||| ||    ||||||||||||||||||||| ||||| ||||||||||||    
T  18556343 gatgagtaagatgggaatcgattagaagagaccaattaagatgaataggaaagaaagcagataagaggtaatagttataatgtttgacgataataataat 18556442  T
Q  107 gaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttaga 206  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| |    
T  18556443 gactggtatcgagagaatgaaaccttgaattataatgaagtcttggtgagggaagtttatgaagtcgaaagtaatgataaagtgcgataataactttaaa 18556542  T
Q  207 ttagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataa 306  Q
    ||||||||||||| ||||||||||||| ||| ||||||| |||| ||| |||||||||   ||||||||| ||||||||   | |||||||| | ||||     
T  18556543 ttagaacgaggttcagattaggagaatggtttacgtatagatgaagatcaatgtgaggacgaagtaataaaatgtaaaggtgcattaatgag-ataatat 18556641  T
Q  307 gtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgagg 406  Q
    |||| |||||||||||||| ||||| |||||||||||| |||||||| | | ||||||||||||||||||||||||||||| ||||||| |||| ||||     
T  18556642 gtat-aaggagttaatgacgatggttaggtagaacctatttgtaaagggaggagatgttatgataacgaataagtaaacaaattaagactaagaatgaga 18556740  T
Q  407 aatatggtatgat 419  Q
    |||||||||||||    
T  18556741 aatatggtatgat 18556753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 11097824 - 11098236
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacc 110  Q
    ||||||||||||||| ||| ||||| ||||||     ||||||||||||||||   ||||||||||||| |||||||  || | ||||| ||||| |||     
T  11097824 gatgaataagatggggatcgattaggagagag----caagatgaataggaaagaggataagaggtaataattataatggtttacgataacaataacgact 11097919  T
Q  111 ggtatcgagagaataaaaccttgaattata-atgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagatta 209  Q
     ||||||||||||| |||||||||||||||  || |||||| |||||| ||||||  |||||| ||| ||||||  ||||| ||||||||||||| ||||    
T  11097920 agtatcgagagaatgaaaccttgaattatatttgtagtcttagtgaggaaagtttctgaagtcaaaattaatgataaggtgagataataactttaaatta 11098019  T
Q  210 gaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagta 309  Q
    |||||| ||| |||||||| |||| |  || | ||||||||| |  ||  ||||   ||||||||||||  |||||||   ||| |||||||||||||||    
T  11098020 gaacgaagttaagattaggggaatggaagatgcataaatgactacaaacatgagaacaaagtaataagagataaagtcgttttattgagaagaataagta 11098119  T
Q  310 tgaaggagttaatgacaatggtgaggtagaacctagttgtaaagaggg-------tagatgttatgataacgaataagtaaacaacttaagaccaagatt 402  Q
    ||||||| |||||||| |||||||| ||| |||||||||||||||| |       || |||  ||||||| ||| ||||||| | |||||||| |||| |    
T  11098120 tgaaggaattaatgacgatggtgagttaggacctagttgtaaagagaggagacattatatgaaatgataatgaacaagtaaatatcttaagactaagaat 11098219  T
Q  403 gaggaatatggtatgat 419  Q
    |||||||| ||||||||    
T  11098220 gaggaataaggtatgat 11098236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 48 - 348
Target Start/End: Original strand, 15872314 - 15872616
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| |||||||||| ||||| | ||||||||||||| ||||| |||||||||||  ||||| ||||||||||||||| |||||||||||||||||     
T  15872314 aagatgagtaggaaagcagataagcgataatagttataatgtttgacgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagc 15872413  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    ||| |||||| ||||||  ||  || |||||| |||     || ||||||||||||| ||||| |  | ||| |||||||||||||||| || ||||| |    
T  15872414 cttagtgaggaaagtttctgatatcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtataga 15872513  T
Q  248 tgacgatgaatgtgaggcaaaagtaataaga-tgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctag 345  Q
    |||||| |||||||||   || ||||||||| | |||||||   || |||||||||||||| || ||| ||||||||||| |||||| || |||||||||    
T  15872514 tgacgacgaatgtgagaacaaggtaataagattataaagtcgtattaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctag 15872613  T
Q  346 ttg 348  Q
    |||    
T  15872614 ttg 15872616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 48 - 348
Target Start/End: Original strand, 15889906 - 15890208
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| ||||||| |  ||||| | ||||||||||||| |||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||     
T  15889906 aagatgagtaggaaaccggataagcgataatagttataatgtttgatgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagc 15890005  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    ||| |||||| ||||||  || ||| |||||| |||     || ||||||||||||| ||||| |  | ||| ||||||||| |||||| || ||||| |    
T  15890006 cttagtgaggaaagtttctgatgtcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggaaaatagtcgatgtataga 15890105  T
Q  248 tgacgatgaatgtgaggcaaaagtaataaga-tgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctag 345  Q
    |||||| |||||||||   || ||||||||| | |||||||   || |||||||||||||| || ||| ||||||||||| |||||| || |||||||||    
T  15890106 tgacgacgaatgtgagaacaaggtaataagattataaagtcgttttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctag 15890205  T
Q  346 ttg 348  Q
    |||    
T  15890206 ttg 15890208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 48 - 355
Target Start/End: Complemental strand, 12229546 - 12229238
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| ||||||||   ||||| ||||||||||||||| ||||| |||||||||||  |||||||| || | ||||||| ||||||||||| ||||||    
T  12229546 aagatgagtaggaaagaggataagcggtaatagttataatgtttgacgataataataacaaccggtattgaaaaaataaaatcttgaattatactgaagt 12229447  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    ||| |||| | ||||||  |||| |||||||| |||  | ||| ||||||||||| | ||||| |  | ||| |||||||||||||||| || ||||| |    
T  12229446 cttagtgaagaaagtttctgaagccgaaagtactgataaagtgagataataacttcaaattaggattaagttaagattaggagaatagtcgatgtataga 12229347  T
Q  248 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 346  Q
    ||||||  ||||||||   || | |||||||| |||||||   || |||||||||||||| || ||| | ||||||||| |||||| || ||||||||||    
T  12229346 tgacgacaaatgtgagaacaaggaaataagatttaaagtcgttttaaatgagaagaataattacgaaagcgttaatgacgatggtgtggaagaacctagt 12229247  T
Q  347 tgtaaagag 355  Q
    |||| ||||    
T  12229246 tgtatagag 12229238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 11556580 - 11556395
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||||||||||||   ||||||||||||| |||||||  |||| ||||||||||| |||  |||| |||||||| |||||||||||||||||| |||    
T  11556580 aagatgaataggaaagaggataagaggtaataattataatggttgacgataataataacgactagtattgagagaatgaaaccttgaattataatgtagt 11556481  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaat 233  Q
    ||| |||||| |||||   |||||||||| ||||||   |||| ||||||||||||| ||||||| || ||| |||||||| ||||    
T  11556480 cttagtgaggaaagttgctgaagtcgaaattaatgatatggtgagataataactttaaattagaatgaagttaagattaggggaat 11556395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 18220279 - 18220443
Alignment:
Q  69 aagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttagga 168  Q
    |||||||||||||||||||  |||   |||||||||| |||  ||||||||||||| |||||||||||||||||| |||||| |||||  |||||   ||    
T  18220279 aagaggtaatagttataatggttgtcaataataataacgactagtatcgagagaatgaaaccttgaattataatgtagtcttagtgagaaaagttgttga 18220378  T
Q  169 agtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaat 233  Q
    |||||||| ||||||  ||||| ||||||||||||| ||||||| || ||| |||||||| ||||    
T  18220379 agtcgaaattaatgataaggtgagataataactttatattagaatgaagttaagattaggggaat 18220443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 48 - 347
Target Start/End: Original strand, 16284496 - 16284796
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaa-ttataatgaag 146  Q
    |||||| ||||||||  | |||||| |||| | ||||||| |||| ||||||  |||| ||| | ||||||||||||||  |||| || |||||||||||    
T  16284496 aagatgtataggaaataagataagacgtaaaatttataatgtttgttgataaatataacgactgatatcgagagaataactccttaaaattataatgaag 16284595  T
Q  147 tcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataa 246  Q
    | || |||||| |||||   ||||| |||||||| ||  || || ||||||||||||| | ||||| || ||| |  ||||||||||  |    |||||     
T  16284596 ttttagtgaggaaagttgttgaagttgaaagtaacgataagatgagataataactttaaaatagaatgaagttaaagttaggagaatgatcattgtatag 16284695  T
Q  247 atgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 346  Q
    | ||||| |||| ||||    | | |||||||| ||||||  | ||| || |||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  16284696 acgacgacgaatttgagaacgaggaaataagatataaagtttctttattgggaagaataagtatgaaagagttaatggcaatggtgagggagaacctagt 16284795  T
Q  347 t 347  Q
    |    
T  16284796 t 16284796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 47 - 226
Target Start/End: Original strand, 30275514 - 30275693
Alignment:
Q  47 taagatgaataggaaagcaaataagaggtaatagt-tataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaa 145  Q
    |||||||||||  |||| | ||||||| ||||||| |||||| ||||| ||||||||||| ||| |||| ||||| | ||||||| | || |||||||||    
T  30275514 taagatgaataaaaaagaagataagagataatagtatataatgtttgacgataataataacgactggtaacgagatattaaaaccctaaaatataatgaa 30275613  T
Q  146 gtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagatta 226  Q
    || || ||| || ||||| | || ||||||||||||||  |||||  |||||||||||| ||||||| || ||| ||||||    
T  30275614 gttttagtg-ggaaagttgatgacgtcgaaagtaatgataaggtgaaataataactttaaattagaatgaagttaagatta 30275693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 415 - 498
Target Start/End: Original strand, 18556956 - 18557039
Alignment:
Q  415 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatga 498  Q
    ||||||||||||||||||||||| ||||| |||| ||| | |||||| ||||||| | |||||||||||||  |||||||||||    
T  18556956 atgatgagtaatgttatgtaaacctataaatacgtgcgatgaaagttgatgaggtttgtatcataaagatgaagagagtgatga 18557039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 18231190 - 18231242
Alignment:
Q  295 tgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    ||||||||||||||||||| || |||||| ||||||||||| |||||||||||    
T  18231190 tgagaagaataagtatgaaagaattaatggcaatggtgaggaagaacctagtt 18231242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 247 - 419
Target Start/End: Original strand, 13772 - 13944
Alignment:
Q  247 atgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 346  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  13772 atgacgatgaatgtgaggacaaagtaataagatgtaaagtcacgttaatgagaaaaataagtatgaaggagttaatgacaatggtgaggtagaacctact 13871  T
Q  347 tgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 419  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13872 tgtaaatagagtagatgttatgataacgaataagtaaacaacttaagaccaagaatgaggaatatggtatgat 13944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 13649 - 13763
Alignment:
Q  37 agagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaat 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  13649 agagagaaattaagatgaatagaaaagcaaataagaggtaatagttataatctttggcgataataataatgaccggtatcgagagaataaaaccttgaat 13748  T
Q  137 tataatgaagtcttg 151  Q
    |||||||||||||||    
T  13749 tataatgaagtcttg 13763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 415 - 498
Target Start/End: Original strand, 14146 - 14229
Alignment:
Q  415 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatga 498  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  14146 atgatgagcaatgttatgtaaacttataagtacgtgcggtgaaagttgatgaggtctatatcataaagatgctgagagtgatga 14229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 48 - 355
Target Start/End: Original strand, 13477125 - 13477432
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||||||||||||   | ||||| |||||||||||||  ||||  ||||||||||||||  ||||||||||||| ||||||| |||||||||| |||    
T  13477125 aagatgaataggaaagaggacaagagataatagttataatggttgacaataataataatgactagtatcgagagaatgaaaccttaaattataatgtagt 13477224  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    ||| |||||| |||||   |||||| ||| ||||||  ||||| |||||||| ||||  ||||||||| ||| |||||||| |||| |   ||| ||  |    
T  13477225 cttagtgaggaaagttgctgaagtccaaattaatgataaggtgagataataagtttaatttagaacgaagttaagattaggggaatggacaacgcatgga 13477324  T
Q  248 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    |||| |  ||  ||||   ||||||||||||| ||||||||  ||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  13477325 tgactacaaacatgagaacaaagtaataagatataaagtcattttattgagaagaataagtatgaaggagttaatgacgatggtgaggtaggacctagtt 13477424  T
Q  348 gtaaagag 355  Q
    ||||||||    
T  13477425 gtaaagag 13477432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 20026666 - 20026330
Alignment:
Q  14 gaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggt 113  Q
    |||||||||| ||||| |||| ||||||||||     || | |||||||| | ||||||  || |||||||||  || || ||| |||||||||||| ||    
T  20026666 gaataagatgtgaatctattaaaagagagaaaa----attagtaggaaagaagataagaaatattagttataaggttagacgatgataataatgaccagt 20026571  T
Q  114 atcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaac 213  Q
    ||||||||||||||||||| ||||| |||| |||| | |||||| |||||   |||||||||| ||||||   |||| |||||||||| || |||||||     
T  20026570 atcgagagaataaaacctttaattagaatggagtcgtagtgaggaaagttgttgaagtcgaaattaatgatagggtgagataataactctaaattagaat 20026471  T
Q  214 gaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaa 313  Q
    || ||| |||||||| |||| |  || | ||| ||||  |||||| ||||   ||| ||||||||| |||| |    ||| |||||||||| ||||||||    
T  20026470 gaagttaagattaggggaatggacgatgcatatatgaatatgaatatgagaacaaattaataagatataaattatttttattgagaagaatcagtatgaa 20026371  T
Q  314 ggagttaatgacaatggtgaggtagaacctagttgtaaaga 354  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  20026370 ggagttaatgacgatggtgaggtaggacctagttgtaaaga 20026330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 120 - 350
Target Start/End: Original strand, 37945357 - 37945587
Alignment:
Q  120 agaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtt 219  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||   ||||| |||||||||||  ||||| |||||||||||||  ||||||  | |||    
T  37945357 agaataaaatcttgaattataatgaagtcttagtgaggaaagttgctgaagttgaaagtaatgaaaaggtgagataataactttaatttagaatcaagtt 37945456  T
Q  220 tagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagtt 319  Q
     |||||||||||||  ||| |||||| |||||||||||||||||    | |||||||||| || |||| | ||  |||| ||||| |||||||| |||||    
T  37945457 aagattaggagaatgattggcgtatagatgacgatgaatgtgagaacgaggtaataagatatatagtcgctttggtgagcagaatgagtatgaaagagtt 37945556  T
Q  320 aatgacaatggtgaggtagaacctagttgta 350  Q
    |||||  ||||||||| ||||||||||||||    
T  37945557 aatgatgatggtgaggaagaacctagttgta 37945587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 22614568 - 22614683
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||||||||||||   |||||||||||||||||||||  || | ||||||||||| |||  ||||||||||||| |||||||||||||||||| |||    
T  22614568 aagatgaataggaaagaggataagaggtaatagttataatggttaacgataataataaagactagtatcgagagaatgaaaccttgaattataatgtagt 22614667  T
Q  148 cttggtgagggaagtt 163  Q
    ||| |||||| |||||    
T  22614668 cttagtgaggaaagtt 22614683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 233
Target Start/End: Original strand, 4531253 - 4531419
Alignment:
Q  67 ataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttag 166  Q
    |||| ||||||||||||| ||  |||| ||||||||||| || | ||||||||||||  |||||| |||||||| ||||||||   || || ||| |       
T  4531253 ataaaaggtaatagttatgatggttgacgataataataacgatcagtatcgagagaaggaaacctcgaattatagtgaagtctcattggggaaagctgtt 4531352  T
Q  167 gaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaat 233  Q
    |||||||||   |||||  ||||| ||||||||||||| |||||||||| ||| |||||||| ||||    
T  4531353 gaagtcgaattcaatgataaggtgagataataactttaaattagaacgaagttaagattaggtgaat 4531419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 419
Target Start/End: Complemental strand, 16060945 - 16060786
Alignment:
Q  268 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgagg-tagaacctagttgtaaagagggtag------ 360  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||||||||||  | ||||||| | || |||| | ||          
T  16060945 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaatggtgaggaaaaaacctagatatatagagcggagactttg 16060846  T
Q  361 -atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 419  Q
     |||| |||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||    
T  16060845 catgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgat 16060786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 11655759 - 11655650
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||||||||||||   |||||||||||||||||||  |       |||||||||| |||  ||||||| ||||| |||||||||||||||||| |||    
T  11655759 aagatgaataggaaagaggataagaggtaatagttatataca------ataataataaagactagtatcgacagaatgaaaccttgaattataatgtagt 11655666  T
Q  148 cttggtgagggaagtt 163  Q
     || |||||| |||||    
T  11655665 attagtgaggaaagtt 11655650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 48377248 - 48377172
Alignment:
Q  268 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaaccta 344  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||    
T  48377248 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaaccta 48377172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 48377379 - 48377331
Alignment:
Q  99 ataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| ||||| |||| ||||||| |||||| |||||||||||||||    
T  48377379 ataataacgaccgatatcaagagaatgaaacctcgaattataatgaagt 48377331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 13937614 - 13937394
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacc 110  Q
    |||| |||||| || |||| |||||||||||| ||    ||||||||||||||    |||||||||||||||||| | ||||||||||||||||| ||||    
T  13937614 gatgtataagacggaaatcgattagaagagagcaag---gatgaataggaaagagggtaagaggtaatagttatactatttgatgataataataacgacc 13937518  T
Q  111 ggtat-cgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagatta 209  Q
    | ||| ||||  ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||  ||||| ||||||||||||| ||||    
T  13937517 gatattcgaggaaataaaaccttgaattataatgaagtcttagtgagggaagttttcgaagtcgaaagtaatgataaggtgagataataactttaaatta 13937418  T
Q  210 gaacgaggtttagattaggagaat 233  Q
    ||| || ||| ||||||| |||||    
T  13937417 gaatgaagttaagattagaagaat 13937394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 24831455 - 24831668
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacc 110  Q
    ||||||||| ||||| ||| ||||||||||||    |||||||||||||||||   |||||||||||||||||||||  ||||  ||||||||||||||     
T  24831455 gatgaataaaatggggatcgattagaagagag----taagatgaataggaaagaggataagaggtaatagttataatggttgacaataataataatgact 24831550  T
Q  111 ggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattag 210  Q
     |||||||||||||||||||||||||||||||| |||||| |||| | |||||   |||||| ||| ||||||  ||||| |||| |||||||| |||||    
T  24831551 agtatcgagagaataaaaccttgaattataatgtagtcttagtgaagaaagttgttgaagtcaaaattaatgataaggtgagatagtaactttaaattag 24831650  T
Q  211 aacgaggtttagattagg 228  Q
    ||||  ||| ||||||||    
T  24831651 aacggagttaagattagg 24831668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 48 - 263
Target Start/End: Complemental strand, 24759423 - 24759208
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    |||||||||||||| | | ||||||||||||||||||||| ||||| ||||||| ||| |||| |||||||||||||||  |||| ||||||||||||||    
T  24759423 aagatgaataggaaggaagataagaggtaatagttataatttttgacgataatattaacgacctgtatcgagagaataactccttaaattataatgaagt 24759324  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    |||  ||||| |||||   |||||||||||||| ||  || || ||||||||||||| | ||||| |||||| |  |||||| ||| || || ||||| |    
T  24759323 cttactgaggaaagttgctgaagtcgaaagtaacgataagatgagataataactttaaaatagaatgaggttaaagttaggataatggtcgatgtataga 24759224  T
Q  248 tgacgatgaatgtgag 263  Q
    |||| | |||||||||    
T  24759223 tgactacgaatgtgag 24759208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 48 - 350
Target Start/End: Original strand, 23960375 - 23960682
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    |||||||||| ||| | | ||||||||||||||||||||  |||||||||||| |||| |||||||||||||| ||||| ||||| | |||||||| |||    
T  23960375 aagatgaataagaaggaagataagaggtaatagttataaagtttgatgataattataacgaccggtatcgagaaaataagaccttaagttataatggagt 23960474  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagt-----tgacgt 242  Q
     |||| |||| |||||   || ||| |||||||||   ||||| ||||||||||||| ||||||| || ||| || || |  | || ||     | || |    
T  23960475 tttggcgaggaaagttgctgacgtcaaaagtaatggtaaggtgagataataactttaaattagaatgaagttaaggttggaggcatggtcaacgtaacat 23960574  T
Q  243 ataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacc 342  Q
    ||| | |||||||||||||||    | |||||||||| || |||||  ||||||||||||||||||| |   ||||||||||| ||||||||| ||||||    
T  23960575 atagaagacgatgaatgtgagagcgaggtaataagatatagagtcaatttaatgagaagaataagtacggtagagttaatgacgatggtgaggaagaacc 23960674  T
Q  343 tagttgta 350  Q
    ||||||||    
T  23960675 tagttgta 23960682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 17458356 - 17458283
Alignment:
Q  281 taaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagag 355  Q
    ||||||| | |||||| ||||||||||||  ||| |||||||||| ||||||||| |||||||||||||| ||||    
T  17458356 taaagtcgctttaatgggaagaataagtacaaag-agttaatgacgatggtgagggagaacctagttgtatagag 17458283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 17458561 - 17458485
Alignment:
Q  71 gaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||||| ||||||| |||||  |||||||||| || || ||||||||||||||   ||| ||||||||||||||    
T  17458561 gaggtaataattataatatttgacaataataataacgatcgatatcgagagaataacttcttaaattataatgaagt 17458485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 13936122 - 13936063
Alignment:
Q  291 ttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgta 350  Q
    ||||||||||  ||||||| ||| ||||||||||| |||||| || ||||||||||||||    
T  13936122 ttaatgagaaagataagtaagaaagagttaatgacgatggtggggaagaacctagttgta 13936063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 1712 - 1544
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacc 110  Q
    ||||||||| ||||| ||| ||||||| ||||    |||||||||||||||||  ||||||||||||||||||||||  |||| ||||||||||| |||     
T  1712 gatgaataaaatggggatcgattagaaaagag----taagatgaataggaaagagaataagaggtaatagttataatggttgacgataataataacgact 1617  T
Q  111 ggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatga 183  Q
     ||||||||||| | |||||||||||||||||| ||||||||||||| |||||   |||||||||| ||||||    
T  1616 agtatcgagagattgaaaccttgaattataatgtagtcttggtgaggaaagttgttgaagtcgaaattaatga 1544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 48 - 263
Target Start/End: Complemental strand, 1917 - 1702
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    |||||||||||||| | | ||||||||||||||||||||| ||||| ||||||| ||| |||| |||||||||||||||  |||| ||||||||||||||    
T  1917 aagatgaataggaaggaagataagaggtaatagttataatttttgacgataatattaacgacctgtatcgagagaataactccttaaattataatgaagt 1818  T
Q  148 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 247  Q
    |||  ||||| |||||   |||||||||||||| ||  || || ||||||||||||| | ||||| |||||| |  |||||| ||| || || ||||| |    
T  1817 cttactgaggaaagttgctgaagtcgaaagtaacgataagatgagataataactttaaaatagaatgaggttaaagttaggataatggtcgatgtataga 1718  T
Q  248 tgacgatgaatgtgag 263  Q
    |||| | |||||||||    
T  1717 tgactacgaatgtgag 1702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 73 - 345
Target Start/End: Complemental strand, 14848 - 14575
Alignment:
Q  73 ggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagtc 172  Q
    ||||||||||||||| ||||| |||||||||||  || |||| ||||||||||||| |||||||||||| |||| ||| |||||| || |||  ||||||    
T  14848 ggtaatagttataatgtttgacgataataataacaactggtaacgagagaataaaatcttgaattataaagaagccttagtgaggaaattttctgaagtc 14749  T
Q  173 gaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagta 272  Q
     |||||| |||  | ||| |||||||| |||| ||||| |  | ||| |||||||||||| ||| || ||||| ||||||| |||||||||   || |||    
T  14748 aaaagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaaaagtcgatgtatagatgacgacgaatgtgagaacaaggta 14649  T
Q  273 ataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctag 345  Q
    ||||||| |||||||   || ||||||||||||||  | ||| |||||||| || |||||| || |||||||||    
T  14648 ataagatataaagtcgttttaaatgagaagaataatcacgaaagagttaataacgatggtggggaagaacctag 14575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 56 - 332
Target Start/End: Complemental strand, 10740 - 10463
Alignment:
Q  56 taggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtga 155  Q
    |||||||||  ||||| ||||||||||||||| ||||| |||||||||||  || | ||| |||||||||||| |||||||||||||||||  || ||||    
T  10740 taggaaagcggataagcggtaatagttataatgtttgacgataataataacaacagatattgagagaataaaatcttgaattataatgaagcattagtga 10641  T
Q  156 gggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagatta-gaacgaggtttagattaggagaatagttgacgtataaatgacgat 254  Q
    || ||||||  |||||  |||||||||   | ||| ||||||| ||||| |||| ||   ||||| |||||||||||||||| || ||||| |||||||     
T  10640 ggaaagtttctgaagttaaaagtaatggtaaagtgagataatagctttaaattaggattaaggttaagattaggagaatagtcgatgtatagatgacgac 10541  T
Q  255 gaatgtgaggcaaaagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtg 332  Q
    |||||||||   || |||||||||| |||||||   || ||| |||||||||| || ||| ||||||||||| ||||||    
T  10540 gaatgtgagaacaaggtaataagatataaagtcgttttaaattagaagaataattacgaa-gagttaatgacgatggtg 10463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 67 - 347
Target Start/End: Complemental strand, 29294497 - 29294217
Alignment:
Q  67 ataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttag 166  Q
    |||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||| ||||||  ||||||| ||||||||  |||||| |||||       
T  29294497 ataagaggtaatagttataatgattgacgataataataacgaccggtatcgagagaatgaaacctcaaattatagtgaagtctcagtgaggaaagttgct 29294398  T
Q  167 gaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggca 266  Q
    |||||| ||  |||| |  ||||| ||||||||||||| ||||| |||| ||| ||| |||| |||| |  || | | | ||||| | | | |||||       
T  29294397 gaagtcaaatttaattataaggtgagataataactttaaattaggacgaagttaagagtaggggaatggacgatgcacagatgactacgcacgtgagaac 29294298  T
Q  267 aaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    ||||||| ||||| |||  ||   ||| |||| |||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  29294297 aaagtaacaagatataagatcgttttattgaggagaataagtatgaaagagttaatgactatggtgagggagaacctagtt 29294217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 23659100 - 23659051
Alignment:
Q  98 aataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    |||||||| ||||| |||| ||||||| |||||| |||||||||||||||    
T  23659100 aataataacgaccgatatcaagagaatgaaacctcgaattataatgaagt 23659051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 72 - 347
Target Start/End: Original strand, 3155 - 3430
Alignment:
Q  72 aggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtttaggaagt 171  Q
    ||||||||||||||||  |||| ||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||   ||||| |||||   |||||    
T  3155 aggtaatagttataatggttgacgataataataatgactggtatcaagagaatgaaaccttgaattatagtgaagtctcaatgaggaaagttgttgaagt 3254  T
Q  172 cgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagt 271  Q
    | ||  ||||||  ||||| ||||||||||||| |||||||||| ||| |||||||| |||| |  || | ||| ||||| |   | || ||   |||||    
T  3255 ctaatttaatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatggacgatgcatagatgactacacacgtaagaacaaagt 3354  T
Q  272 aataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    |||||||| |||  ||   ||| |||| ||||| |||||||| |||||||||  |||||||||| |||||||||||    
T  3355 aataagatataagatcgttttattgaggagaatgagtatgaaagagttaatggaaatggtgaggaagaacctagtt 3430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 13254 - 12921
Alignment:
Q  11 gatgaataagatgggaatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacc 110  Q
    |||||||||||| || ||| ||||||||||||     |||||| ||||||||  | |||||| |||| | ||||||| |||||||||||  |||| |||     
T  13254 gatgaataagattgggatccattagaagagag----caagatgtataggaaataagataagacgtaacatttataatgtttgatgataaatataacgact 13159  T
Q  111 ggtatcgagagaataaaacctt-gaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagatta 209  Q
    | ||||||||||||||  ||||  |||||||||||||| || |||||| |||||   ||||| |||||||| ||  || || ||||||||||||| | ||    
T  13158 gatatcgagagaataactccttaaaattataatgaagttttagtgaggaaagttgttgaagttgaaagtaacgataagatgagataataactttaaaata 13059  T
Q  210 gaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagta 309  Q
    ||| || ||| |  ||||||||||  |    ||||| | ||||| |||| ||||    | | |||||||| ||||||  | ||| || ||||||||||||    
T  13058 gaatgaagttaaagttaggagaatgatcattgtatagacgacgacgaatttgagaacgaggaaataagatataaagtttctttattgggaagaataagta 12959  T
Q  310 tgaaggagttaatgacaatggtgaggtagaacctagtt 347  Q
    |||| ||||||||| ||||||||||| |||||||||||    
T  12958 tgaaagagttaatggcaatggtgagggagaacctagtt 12921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 419
Target Start/End: Complemental strand, 131240 - 131056
Alignment:
Q  241 gtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaa 340  Q
    ||||||||||||| ||| |||||  | |||||||||||| |||||||   ||| ||||||||||||||| ||| |||||||| ||||| |||||| | ||    
T  131240 gtataaatgacgacgaacgtgaga-acaagtaataagatataaagtcgttttattgagaagaataagtaggaaagagttaataacaattgtgaggaaaaa 131142  T
Q  341 cctagttgtaaagagggtag-------atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 419  Q
    ||||| | || |||| | ||       |||| |||||| |||||||| ||||||||| ||||| ||| ||||||||| ||||||||    
T  131141 cctagatatatagagcggagagtttgcatgtaatgatagcgaataagaaaacaacttgagaccgagaatgaggaatagggtatgat 131056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 52699 - 52635
Alignment:
Q  99 ataataatgaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtt 163  Q
    |||||||  ||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||    
T  52699 ataataacaaccggtatcgagagaataaaaccttaaattataatggagtcttagtgaggaaagtt 52635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 87134 - 87187
Alignment:
Q  110 cggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaagtt 163  Q
    ||||||||||||||||||||||| |||||||||| |||||| | |||| |||||    
T  87134 cggtatcgagagaataaaaccttaaattataatggagtcttagagaggaaagtt 87187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 419
Target Start/End: Original strand, 13881940 - 13882098
Alignment:
Q  268 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtag------- 360  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||| | ||           
T  13881940 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagactttgc 13882039  T
Q  361 atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 419  Q
    |||| |||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||    
T  13882040 atgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgat 13882098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 13881756 - 13881855
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    |||||| |||||||||   |||||||||| ||||| ||||   ||| ||  ||||||| |||||||||| ||||||| |||||| |||||||||||||||    
T  13881756 aagatgcataggaaagaggataagaggtagtagttgtaatgagtgacgaatataataacgaccggtatcaagagaatgaaacctcgaattataatgaagt 13881855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 51626492 - 51626591
Alignment:
Q  48 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    |||||| |||||||||   |||||||||||||||| ||||   ||| ||  ||||||| || ||||||| | ||||| |||||| |||||||||||||||    
T  51626492 aagatgcataggaaagaggataagaggtaatagttgtaatgagtgacgaatataataacgaacggtatcaaaagaatgaaacctcgaattataatgaagt 51626591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 310 - 252
Alignment:
Q  361 atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 419  Q
    |||| |||||| |||||||| ||||||||| ||||||||| ||||||||||| ||||||    
T  310 atgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatatgatatgat 252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 542 - 494
Alignment:
Q  99 ataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| |||||||||| ||||||| | |||| |||||||||||||||    
T  542 ataataacgaccggtatcaagagaatgagacctcgaattataatgaagt 494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 419
Target Start/End: Complemental strand, 29490 - 29331
Alignment:
Q  268 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtag------- 360  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||| | ||           
T  29490 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagactttgc 29391  T
Q  361 atgttatgataacgaataag-taaacaacttaagaccaagattgaggaatatggtatgat 419  Q
    |||| |||||| ||||||||  ||||||||| ||||||||| ||||||||| ||||||||    
T  29390 atgtaatgatagcgaataagaaaaacaacttgagaccaagaatgaggaatagggtatgat 29331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 29623 - 29575
Alignment:
Q  99 ataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| |||||||||| ||||||| |||||| |||||||||||||||    
T  29623 ataataacgaccggtatcaagagaatgaaacctcgaattataatgaagt 29575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 13120 - 13168
Alignment:
Q  99 ataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 147  Q
    ||||||| |||| ||||| |||||| ||||||| |||||||||||||||    
T  13120 ataataacgaccagtatcaagagaaaaaaacctcgaattataatgaagt 13168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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