View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_18 (Length: 463)
Name: NF18809_low_18
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 323 - 449
Target Start/End: Complemental strand, 22839622 - 22839496
Alignment:
| Q |
323 |
taaataattgattgaactaaatgtaattttgtgacatggtaatttaaatgatataaattatatcattatgttggtgtatctcaaatatatattcaatcat |
422 |
Q |
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| T |
22839622 |
taaataattgattgaactaaatgtaattttgtgacatggtaatttaaatgatataaattatatcattatgttggtgtatctcaaatatatattcaatcat |
22839523 |
T |
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| Q |
423 |
acatgatatatggtttgcacataaaac |
449 |
Q |
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| T |
22839522 |
acatgatatatggtttgcacataaaac |
22839496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 22839847 - 22839734
Alignment:
| Q |
155 |
gtaggtagggacgttgtagggagataggctcgtgtaatgctctgccttgttaggttagagttcatcacatgcacatatttttcatcaacaatgatatatt |
254 |
Q |
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| T |
22839847 |
gtaggtagggacgttgtagggagataggctcgtgtaatgctctgccttgttaggttagagttcatcacatgcacatatttttcatcaacaatgatatata |
22839748 |
T |
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| Q |
255 |
aacactccctcacc |
268 |
Q |
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| T |
22839747 |
aacactccctcacc |
22839734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 22839993 - 22839901
Alignment:
| Q |
9 |
acatcatcatcatatagtacaatacaagagtcgtgagctttcttctaagaataataacaaaaaactcttcacaaattttccttcaagtagatg |
101 |
Q |
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| T |
22839993 |
acatcatcatcatatagtacaatacaagagtcgtgagctttcttctaagaataataacaaaaaactcttcacaaattttccttcaagtagatg |
22839901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 382 - 449
Target Start/End: Complemental strand, 22838967 - 22838897
Alignment:
| Q |
382 |
atatcattatgtt-ggtgtatctc--aaatatatattcaatcatacatgatatatggtttgcacataaaac |
449 |
Q |
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| T |
22838967 |
atatcattatgtttggtgtatctctcaaatatatattcaatcatacatgatatatggtttgcacataaaac |
22838897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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