View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_23 (Length: 429)
Name: NF18809_low_23
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 30947709 - 30947521
Alignment:
| Q |
16 |
atcaagcgacgaacaacattgttgcaacaattgcaaactatgttgacactaaattgactttctcattaatattcattccgatacaatattaagaacagta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30947709 |
atcaagcgacgaacaacattgttgcaacaattgcaaactatgttgacactaaattgactttctcattaatattcattccgatacaatattaagaacagta |
30947610 |
T |
|
| Q |
116 |
cagattggaacgaaattctaagaagatactcacgacggcagtgacatcgtgcaaggccggagtaatagttcattctccccttttctaaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30947609 |
cagattggaacgaaattctaagaagatactcacgacggcagtgacatcgtgcaaggccggagtaatagttcattctcccctttcctaaa |
30947521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 249 - 412
Target Start/End: Complemental strand, 30947509 - 30947346
Alignment:
| Q |
249 |
aaacacctcataggcagcacaataatacc-ttgctaaagaataatgaagaagaaaaagagagactcagagttagggttgagaagagagacaacaggagca |
347 |
Q |
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|||||||||| |||||| ||||||||||| ||||||||||||||||||||| ||| ||||| || |||||||||||||||||||||||||||| ||||| |
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| T |
30947509 |
aaacacctcacaggcagaacaataatacccttgctaaagaataatgaagaa-aaagagagacacatagagttagggttgagaagagagacaacaagagca |
30947411 |
T |
|
| Q |
348 |
acaatgcttgaactgcaataggacgttcaatgctgccgcattcttgatgaaatctcagctaaatt |
412 |
Q |
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| T |
30947410 |
acaatgcttgaactgcaatcggacgttcaatgctgccgcattcttgatgaaatctcagctaaatt |
30947346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 3367602 - 3367707
Alignment:
| Q |
195 |
cttttctaaataagcacacgattgcaaaacacagtcaaatttcagtgagt-----tatcaaacacctcataggcagcacaataataccttgctaaagaat |
289 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3367602 |
ctttcctaaataagcacacaattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaat |
3367701 |
T |
|
| Q |
290 |
aatgaa |
295 |
Q |
| |
|
|||||| |
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|
| T |
3367702 |
aatgaa |
3367707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 54188514 - 54188619
Alignment:
| Q |
195 |
cttttctaaataagcacacgattgcaaaacacagtcaaatttcagtgagt-----tatcaaacacctcataggcagcacaataataccttgctaaagaat |
289 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
54188514 |
ctttcctaaataagcacacaattgcaaaacacagtcaaatttcattgagtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaat |
54188613 |
T |
|
| Q |
290 |
aatgaa |
295 |
Q |
| |
|
|||||| |
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|
| T |
54188614 |
aatgaa |
54188619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 8570664 - 8570559
Alignment:
| Q |
195 |
cttttctaaataagcacacgattgcaaaacacagtcaaatttcagtgagt-----tatcaaacacctcataggcagcacaataataccttgctaaagaat |
289 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||| || || |||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
8570664 |
ctttcctaaataagcacacaattgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaat |
8570565 |
T |
|
| Q |
290 |
aatgaa |
295 |
Q |
| |
|
|||||| |
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|
| T |
8570564 |
aatgaa |
8570559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 28696624 - 28696519
Alignment:
| Q |
195 |
cttttctaaataagcacacgattgcaaaacacagtcaaatttcagtgagt-----tatcaaacacctcataggcagcacaataataccttgctaaagaat |
289 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||| || || |||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
28696624 |
ctttcctaaataagcacacaattgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaat |
28696525 |
T |
|
| Q |
290 |
aatgaa |
295 |
Q |
| |
|
|||||| |
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|
| T |
28696524 |
aatgaa |
28696519 |
T |
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