View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_24 (Length: 427)
Name: NF18809_low_24
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 2335746 - 2336174
Alignment:
| Q |
1 |
tagtattatagtaaccataactacctgatgaaaaatactcattatcatcgtcatcatcccctcctccttccttctcttccttgtgttctccctttattgt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2335746 |
tagtattatagtaaccataactacttgatgaaaaatactcattatcatcatcatcatcccctcctccttctttctcttccttgtgttctccctttattgt |
2335845 |
T |
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| Q |
101 |
caacactccatcaccaattgttatgttcacattctctttagggattcctggcatgtcatatttcagtttatagtggttgtcactttctttcacacgtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2335846 |
caacactccatcaccaattgttatgttcacattctctttagggattcctggcatgtcatatttcagtttatagtggttgtcactttctttcacacgtcca |
2335945 |
T |
|
| Q |
201 |
cttaatgaccatggtgtcaaattcatgttgttaaatagcttgttgatgttctcagttgcttgcattagggcatttccaagacctgatggaaataactctg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2335946 |
cttaatgaccatggtgtcaaattcatgttgttaaatagcttgttgatgttctcagttacttgcattagggcatttccaagacctgatggaaataactctg |
2336045 |
T |
|
| Q |
301 |
aaaaattaacacaaaaaatataatgtaaggttgtgtttcatgtactcttcagtgggaccatggtt-----tcatggtttcaattcaaataatgcaagaca |
395 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| | |
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| T |
2336046 |
aaaaattaacac--aaaatataatgtaaggttgtgtttcatgtactcttcagtgggaccatggtttcaactcatggtttcaattcaaatgatgc-agata |
2336142 |
T |
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| Q |
396 |
ccaaaatgaccatggtttcaactcaaatattt |
427 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2336143 |
ccaaaatgaccatggtttcaactcaaatattt |
2336174 |
T |
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