View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_26 (Length: 418)
Name: NF18809_low_26
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 33 - 399
Target Start/End: Original strand, 7118849 - 7119218
Alignment:
| Q |
33 |
caatctagtgagtgccccttgatttagattctaacttttttacgaccatataataggtaagaacctctagtatatctaaaacttgagaataaataaaatg |
132 |
Q |
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| T |
7118849 |
caatctagtgagtgccccttgatttaggttctaacttttttacgaccatataataggtaagaacctctagtatatctaaaacttgagaataaataaaatg |
7118948 |
T |
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| Q |
133 |
gaaaaaactaaggttatgttataaaaactggaacaaatcatactcacttgtgtgattgagggtaacatca---nnnnnnnncttttcatatatgatcaat |
229 |
Q |
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| T |
7118949 |
gaaaaaactatggttatgttataaaaactggaacaaatcatactcacttgtgtgattgagggtaacatcattttttttgttcttttcatatatgatcaat |
7119048 |
T |
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| Q |
230 |
aattcaatttacatgaaatagctcatctcacttaacaaaccaaagtcttgactatcattttggagacttggtaaggaatgactgaatgaggcnnnnnnnn |
329 |
Q |
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| T |
7119049 |
aattcgatttacatgaaatagctcatctcacttaacaaaccaaagtcttgactatcattttggagacttggtaaggaatgactgaatgaggcaaaaaagt |
7119148 |
T |
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| Q |
330 |
nnnnntagaataagacttttagcataaaaagatttgcttcagaatctgcaaatccataggaggatggaat |
399 |
Q |
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| T |
7119149 |
aaaaatagaataagacttttagcatgaaaagatttgcttcagaatctgcaaatccataggaggatggaat |
7119218 |
T |
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