View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_27 (Length: 416)
Name: NF18809_low_27
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 33815573 - 33815734
Alignment:
| Q |
18 |
atttctgagtgtagctgcagtagaagctggattgatggcctttctaatcttagaaacattccaagcagtattagcagcatgtcctgctgttgcaaataca |
117 |
Q |
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| T |
33815573 |
atttctgagtgtagctgcagtagaagctggattgatggcctttctaatcttagaaacattccaagcagtattagcagcatgtcctgcagttgcaaataca |
33815672 |
T |
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| Q |
118 |
tgctcagtagcttcccctgcttcttccccatacctgtataaccaagacacacactcttgtta |
179 |
Q |
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| T |
33815673 |
tgctcagttgcttcccctgcttcttccccatacctgtataaccaagacacacactcttgtta |
33815734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 244 - 405
Target Start/End: Original strand, 33815799 - 33815957
Alignment:
| Q |
244 |
ggttcgtaaataattaatttggtagattgttaaatctgtctaaaaaataaatagcctatatctgatagcggacgtgcctatagtggataacatataagtt |
343 |
Q |
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| T |
33815799 |
ggttggtaaataattaacgtggtagattgttaaatctgtctaaaaaa---atagcctatatctgatagcggacgtgcctatagtggataacatataagtt |
33815895 |
T |
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| Q |
344 |
agctgatagttgataaattaatatgttgagttttttacgtgtttggttaaactagttgttca |
405 |
Q |
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| T |
33815896 |
agttgatagttgataaattaatatgttgagttttttacgtgtttggttaaactagttgttca |
33815957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 43161628 - 43161533
Alignment:
| Q |
39 |
agaagctggattgatggcctttctaatcttagaaacattccaagcagtattagcagcatgtcctgctgttgcaaatacatgctcagtagcttcccc |
134 |
Q |
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| T |
43161628 |
agaagctggattgatggcctttcttatcttaaaaacattccaagcagtgttagctgcatgtcccgcagttgcaaacacatgctctgtagcttcccc |
43161533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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