View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_3 (Length: 797)
Name: NF18809_low_3
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 604; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 108 - 784
Target Start/End: Complemental strand, 31606432 - 31605757
Alignment:
| Q |
108 |
gatatatttgctattctgataatagctttaaagaaaagtattgaaacttcattggtcattgatgtatcaagatatatagttaatacattgaaattatagg |
207 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31606432 |
gatatatttgctattctgataatagcattaaagaaaagtattgaaacttcattggtcat-gatgtatcaagatatatagttaatacattgaaattatagg |
31606334 |
T |
|
| Q |
208 |
tgttgatcaaatgagaataacaaacatttaaaaatgatcactgaaattacgttaatctttagctcgcatatttggattaggatattgttatctgcaaacc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31606333 |
tgttgatcaaatgagaataacaaacatttaaaaatgatcactgaaattacgttaatctttagctcgcatatttggattaggatattgttatctgcaaacc |
31606234 |
T |
|
| Q |
308 |
tagagttagatatgtaaattttatactacataagtatcatgtgaaattttaaaactggattaatttcttatctttagcattttctttgagaatgtatcct |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31606233 |
tagagttagatatgtaaattttatactacataagtatcatgtgaaattttaaaactggattaatttcttatctttagcattttctttgagaatgtatcct |
31606134 |
T |
|
| Q |
408 |
tatgtaaaacatgctaataaactcttttgttttcgaaatgtattcaggctggcataatagcaggaccatcagttatggggcaaagtgagttcatnnnnnn |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31606133 |
tatgtaaaacatgctaataaactcttttgttttcgaaatgtattcaggctggcataatagcaggaccatcagttatggggcaaagtgagttcataaaaaa |
31606034 |
T |
|
| Q |
508 |
ntggctattcccaccaaaaacattctacgtaagtgagacaatcgcattttttggatgcatgatgtacatgttcttaatcggaataaaaatcgatctaagt |
607 |
Q |
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| T |
31606033 |
atggctattcccaccaaaaacattctacgtaagtgagacaatcgcattttttggatgcatgatgtacatgttcttaatcggaataaaaatcgatctaagt |
31605934 |
T |
|
| Q |
608 |
ctggttgtaagatcagggaaaaaagcttgggcgattggaatattttcattttttgcaccactaataatgaacacatcaatggcacttctactaagaaaac |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| | ||||| |||||||||||||||||||| |
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| T |
31605933 |
ctggttgtaagatcagggaaaaaagcttgggcgattggaatactttcatttttcgcaccactgataatgagcgtatcaacggcacttctactaagaaaac |
31605834 |
T |
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| Q |
708 |
taatgataaaccctgatgaagttctctatgaatccatattttccgttgcatttatcttatcaaccgcttcatctcac |
784 |
Q |
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| T |
31605833 |
taatgataaaccctgatgaagttctctatgaatccatattttctgttgcatttatcttatcaactgcttcatttcac |
31605757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 397 - 673
Target Start/End: Complemental strand, 31596380 - 31596104
Alignment:
| Q |
397 |
gaatgtatccttatgtaaaacatgctaataaactcttttgttttcgaaatgtattcaggctggcataatagcaggaccatcagttatggggcaaagtgag |
496 |
Q |
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|||||| ||||||||||||||||| | | ||| | ||||||||| ||||||||||||||||||| | ||| |||||| || || |||| |||| ||| |
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| T |
31596380 |
gaatgtttccttatgtaaaacatgttgaaaaattgttttgtttttgaaatgtattcaggctggcttgatattaggaccgtcgtttctgggagaaagcgag |
31596281 |
T |
|
| Q |
497 |
ttcatnnnnnnntggctattcccaccaaaaacattctacgtaagtgagacaatcgcattttttggatgcatgatgtacatgttcttaatcggaataaaaa |
596 |
Q |
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|| || |||||||||||||||| |||||||||| |||||||||||||| |||||| ||| |||||| ||| | |||||||||| ||| |||||| |
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| T |
31596280 |
tttataagaaaatggctattcccaccaagaacattctacataagtgagacaatctcattttatgggtgcatgctgttcttgttcttaattggagtaaaaa |
31596181 |
T |
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| Q |
597 |
tcgatctaagtctggttgtaagatcagggaaaaaagcttgggcgattggaatattttcattttttgcaccactaata |
673 |
Q |
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| T |
31596180 |
tcgatctaggtattgttataagatcagggaaaagagcttgggcaattggaatattttcatttttatcaccactaata |
31596104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 412 - 677
Target Start/End: Complemental strand, 31580506 - 31580241
Alignment:
| Q |
412 |
taaaacatgctaataaactcttttgttttcgaaatgtattcaggctggcataatagcaggaccatcagttatggggcaaagtgagttcatnnnnnnntgg |
511 |
Q |
| |
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|||||||||||||| || ||||||||||| ||||||||||||||||||| | || ||| ||||||||| | |||||||||||| |||| ||| |
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| T |
31580506 |
taaaacatgctaattaattcttttgtttttgaaatgtattcaggctggcttggtactaggtccatcagttttcgggcaaagtgagctcataaaaaaatgg |
31580407 |
T |
|
| Q |
512 |
ctattcccaccaaaaacattctacgtaagtgagacaatcgcattttttggatgcatgatgtacatgttcttaatcggaataaaaatcgatctaagtctgg |
611 |
Q |
| |
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|||| |||| ||||||||||| | | || |||||||| ||| |||||| ||||||| | |||||||||| ||| ||||||||||||||||||| | |
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| T |
31580406 |
atatttccacaaaaaacattcttcattagccagacaatctcatattttgggataatgatgttcttgttcttaattggagtaaaaatcgatctaagtcttg |
31580307 |
T |
|
| Q |
612 |
ttgtaagatcagggaaaaaagcttgggcgattggaatattttcattttttgcaccactaataatga |
677 |
Q |
| |
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|| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||| |
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| T |
31580306 |
ttacaagatcagggaaaaaagcttgggcaattggaacattttcattttttgtaccactattaatga |
31580241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 412 - 657
Target Start/End: Complemental strand, 31564963 - 31564718
Alignment:
| Q |
412 |
taaaacatgctaataaactcttttgttttcgaaatgtattcaggctggcataatagcaggaccatcagttatggggcaaagtgagttcatnnnnnnntgg |
511 |
Q |
| |
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||||||||| || | |||||||||||||| ||||||||||||| |||||| || |||||||| |||| |||||||||||||| | ||| |
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| T |
31564963 |
taaaacatgatagttaactcttttgtttttcaaatgtattcagggtggcatgatgcttggaccatctattatcgggcaaagtgagttgctaaaaaaatgg |
31564864 |
T |
|
| Q |
512 |
ctattcccaccaaaaacattctacgtaagtgagacaatcgcattttttggatgcatgatgtacatgttcttaatcggaataaaaatcgatctaagtctgg |
611 |
Q |
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|||||||||||||||||||| ||| || | |||||||||||| |||||| |||||||||| || ||||| || ||| | | ||||||| ||| | | |
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| T |
31564863 |
ctattcccaccaaaaacattttacatatgccagacaatcgcatattttgggtgcatgatgttcaatttcttgattggagttagaatcgatgtaactatta |
31564764 |
T |
|
| Q |
612 |
ttgtaagatcagggaaaaaagcttgggcgattggaatattttcatt |
657 |
Q |
| |
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| ||||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
31564763 |
tgacaagattagggaaaaaagcttgggcaattggaatagtttcatt |
31564718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 31582319 - 31582220
Alignment:
| Q |
154 |
cttcattggtcattgatgtatcaagatatatagttaatacattgaaattataggtgttgatcaaatgagaataacaaacatttaaaaatgatcactgaaa |
253 |
Q |
| |
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||||||||||||| ||||||||||| ||| ||| ||||||||||||||| | |||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
31582319 |
cttcattggtcatcgatgtatcaagttattaagtgaatacattgaaattaga--tgttgatcaaatgagaataacaaatatttccaaatgatcattgaaa |
31582222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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