View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18809_low_32 (Length: 382)
Name: NF18809_low_32
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 162 - 306
Target Start/End: Original strand, 40675564 - 40675708
Alignment:
| Q |
162 |
ggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctgggt |
261 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40675564 |
ggagggagggccttctgtgcataaacgtagagcgcgtaatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctgggt |
40675663 |
T |
|
| Q |
262 |
tgaacccttgagatccagcattctaaacatttccccaagagcaac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40675664 |
tgaacccttgagatccagcattctaaacatttccccaagagcaac |
40675708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 161 - 306
Target Start/End: Original strand, 40662007 - 40662152
Alignment:
| Q |
161 |
gggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctggg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
40662007 |
gggagggagggccttctgtgcatagacgtagaccgcataatttccaatgagaaatgtcaacagcaacccaccaataacgaggagaacaatcaagtctggg |
40662106 |
T |
|
| Q |
261 |
ttgaacccttgagatccagcattctaaacatttccccaagagcaac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40662107 |
ttgaacccttgagatccagcattctaaacatttccccaagagcaac |
40662152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 40661860 - 40661967
Alignment:
| Q |
14 |
cacagaaccagaattcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40661860 |
cacagaaccagaattcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttc |
40661959 |
T |
|
| Q |
114 |
agcctctc |
121 |
Q |
| |
|
|||||||| |
|
|
| T |
40661960 |
agcctctc |
40661967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 162 - 296
Target Start/End: Original strand, 40656732 - 40656866
Alignment:
| Q |
162 |
ggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctgggt |
261 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||| |
|
|
| T |
40656732 |
ggagggagggccttctgtgcataaacataaagcgcataatttccaatgaggaatgtcaacagcagcccaccaataaccaggagaactactaagcctgggt |
40656831 |
T |
|
| Q |
262 |
tgaacccttgagatccagcattctaaacatttccc |
296 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
40656832 |
tgaacccttgagatccagctttctaaatatttccc |
40656866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 40675416 - 40675523
Alignment:
| Q |
14 |
cacagaaccagaattcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttc |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40675416 |
cacagaaccagaattctttaaaaagtacaaggtaatccacattcaacagaacatttgagtaaaatgcctttactctccaggtgcagagactccttgcttc |
40675515 |
T |
|
| Q |
114 |
agcctctc |
121 |
Q |
| |
|
|||||||| |
|
|
| T |
40675516 |
agcctctc |
40675523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 40656603 - 40656691
Alignment:
| Q |
33 |
aaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttcagcctctc |
121 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40656603 |
aaaaagtacaaggtaatccacattccgtagaacatttgagtacattgcccctactctccaggtgcagagactccttgcttcagtctctc |
40656691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University