View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_33 (Length: 363)
Name: NF18809_low_33
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 42673316 - 42672977
Alignment:
| Q |
13 |
cttttttgttcttttctgctcttgttttaatctgtttatttctgtctccatgctattctgaaagataactcaagcaatggagaaacagttcaattttcca |
112 |
Q |
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| T |
42673316 |
cttttttgttctcttctgctcttgttttaatctgtttatttctgtctccatgctattctgaaagataactcaagcaatggagaaacagttcaattttcca |
42673217 |
T |
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| Q |
113 |
catgttaacaaagttagtctctcatatatgcttaaaatttttaaactctcatataatgataaaagtgagtgactcggtaatttaaaataataatgaagaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42673216 |
catgttaacaaagttagtctctcatatatgcttaaaatttttaaactctcatataatgataaaagtgagtgactcggtaatttaaaataataatgaagaa |
42673117 |
T |
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| Q |
213 |
cttaccgaatcttggttgtcatctgatagggatatcctccgtggataagtctctctttgggacatacatcttgatcctattcttggatccnnnnnnngac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
42673116 |
cttaccgaatcttggttgtcatctgatagggatatcctccgtggataagtctctctttgggacatacatcttgatcctattcttgcatcctttttttgac |
42673017 |
T |
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| Q |
313 |
caaaggatccaccatcgctgcttaagcgcctccgtatttt |
352 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
42673016 |
caaaggatccaccatcgctgcttaagcgcctccttatttt |
42672977 |
T |
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