View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18809_low_34 (Length: 362)

Name: NF18809_low_34
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18809_low_34
NF18809_low_34
[»] scaffold0011 (2 HSPs)
scaffold0011 (192-344)||(135880-136031)
scaffold0011 (74-141)||(135762-135829)
[»] chr2 (2 HSPs)
chr2 (192-344)||(25809216-25809365)
chr2 (72-141)||(25809096-25809165)
[»] chr7 (2 HSPs)
chr7 (192-344)||(23068044-23068199)
chr7 (74-141)||(23068250-23068317)
[»] chr6 (2 HSPs)
chr6 (192-344)||(26908906-26909050)
chr6 (72-141)||(26909102-26909172)
[»] chr5 (2 HSPs)
chr5 (72-141)||(20746376-20746446)
chr5 (192-246)||(20746498-20746552)


Alignment Details
Target: scaffold0011 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 192 - 344
Target Start/End: Original strand, 135880 - 136031
Alignment:
Q  192 cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaannnnnnnnnngtagttgttgtgttgttctacatcttgaat 291  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  135880 cccaaaatctgagctgtttttcaattttttgtgatactattttgttctctatttagttaattttttttt-gtagttgttgtgttgttctacatcttgaat 135978  T
Q  292 gtcaattataaatggaagtttattcatagacataaataatgtggtatttaaaa 344  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  135979 gtcaattataaatggaagtttattcatacacataaataatgtggtatttaaaa 136031  T

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Target: scaffold0011; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 135762 - 135829
Alignment:
Q  74 aactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  135762 aactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat 135829  T

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Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 192 - 344
Target Start/End: Original strand, 25809216 - 25809365
Alignment:
Q  192 cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaannnnnnnnnngtagttgttgtgttgttctacatcttgaat 291  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||          ||||||||||||||||||||||||||||||    
T  25809216 cccaaaatctgagctgtttgtcaatttcttgtgatactattttgttccctatttagttaattttttt---gtagttgttgtgttgttctacatcttgaat 25809312  T
Q  292 gtcaattataaatggaagtttattcatagacataaataatgtggtatttaaaa 344  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  25809313 gtcaattataaatggaaatttattcatacacataaataatgtggtatttaaaa 25809365  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 25809096 - 25809165
Alignment:
Q  72 tgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809096 tgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat 25809165  T

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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 192 - 344
Target Start/End: Complemental strand, 23068199 - 23068044
Alignment:
Q  192 cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaannnnnnnnnn---gtagttgttgtgttgttctacatcttg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||| || ||||||||||||||||||||    
T  23068199 cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaatttttttttttttgtaattattgtgttgttctacatcttg 23068100  T
Q  289 aatgtcaattataaatggaagtttattcatagacataaataatgtggtatttaaaa 344  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23068099 aatgtcaattataaatggaagtttattcatagacataaataatttggtatttaaaa 23068044  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 23068317 - 23068250
Alignment:
Q  74 aactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23068317 aactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat 23068250  T

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Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 192 - 344
Target Start/End: Complemental strand, 26909050 - 26908906
Alignment:
Q  192 cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaannnnnnnnnngtagttgttgtgttgttctacatcttgaat 291  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||              ||||||||||||||||||||||||||    
T  26909050 cccaaaatctgagctgtttttcaatttcttgtgatacggttttgttctccatttagttaatttctt--------ttgttgtgttgttctacatcttgaat 26908959  T
Q  292 gtcaattataaatggaagtttattcatagacataaataatgtggtatttaaaa 344  Q
     | |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  26908958 ctaaattatcaatggaagtttattcatagacataaatattgtggtatttaaaa 26908906  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 26909172 - 26909102
Alignment:
Q  72 tgaactccacttctcacaacccattgaa-cccatctctcatctcattacaagcatgcacccacacaggtat 141  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||  || ||||||||||||||||||||    
T  26909172 tgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtat 26909102  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 20746376 - 20746446
Alignment:
Q  72 tgaactccacttctcacaacccattgaa-cccatctctcatctcattacaagcatgcacccacacaggtat 141  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||  || ||||||||||||||||||||    
T  20746376 tgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtat 20746446  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 20746498 - 20746552
Alignment:
Q  192 cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctattta 246  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  20746498 cccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctattta 20746552  T

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