View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_35 (Length: 360)
Name: NF18809_low_35
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_35 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 1413931 - 1413591
Alignment:
| Q |
16 |
aatatggtggcatgcacataatggttgggcaagagctacagttcatggggctgtcatcatttatcccaaacatggacacacttatccctttcctaaacct |
115 |
Q |
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| T |
1413931 |
aatatggtggcatgcacataatggttgggcaagagctacagttcatggggctgtcatcatttatcccaaacatggacacacttatccctttcctaaacct |
1413832 |
T |
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| Q |
116 |
catgctgaggttccaattatactaggttctcactccttacccttttattttaatggcttaatacaactttaatccttttattttgtctcatttaagattt |
215 |
Q |
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| T |
1413831 |
catgctgaggttccaattatactaggttctcactccttacccttttattttaatggcttaatacaactttaatccttttattttgtctcatttaagattt |
1413732 |
T |
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| Q |
216 |
tggtccttaannnnnnnngacttttcctcctactttgaaacttgaggctagctgaattttgataatataacaaataaaaacttaattcatgacatgacat |
315 |
Q |
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| T |
1413731 |
tggtccttaa----ttttgacctttcctcctactatgaaacttgaggctagctgaattttgataatataacaaataacaacttaattcatggcatgacat |
1413636 |
T |
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| Q |
316 |
tgtttaagcaaattatctcttactagaattgactaattttagttt |
360 |
Q |
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||| ||||||||||||| |||||||| |||||||||||||||||| |
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| T |
1413635 |
tgtgtaagcaaattatcacttactagtattgactaattttagttt |
1413591 |
T |
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