View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_36 (Length: 352)
Name: NF18809_low_36
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 42942882 - 42943208
Alignment:
| Q |
10 |
aatatctgagggagaaataaccgaggtgatgagagtatacactaaaattaaaaaacttaaacatgaatttannnnnnnnnnnnacattatcttgtaacac |
109 |
Q |
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| T |
42942882 |
aatatctgtgggagaaataaccgaggtgatgagagtatacactaaaattaaaaaacttaaacatgattttatttattttt---acattatcttgtaacac |
42942978 |
T |
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| Q |
110 |
aagtaacaattgtttttcgaattttggttattctctcatttcctttcacttcataagattgtgtgtttcatttcttaggctctaattgctacttggaaag |
209 |
Q |
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| T |
42942979 |
aa----caattgtttttcgaattttggttattctctcatttcctttcacttcataagattgtgtgtttcatttcttaggctctaattgctacttggaaag |
42943074 |
T |
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| Q |
210 |
aagcatgtgcatcaacaagttcaagtnnnnnnnnttattcccaagggaacat----------acaagttaatcttagaggtccatgcaatgctccaattg |
299 |
Q |
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| T |
42943075 |
aagcatgtgcatcaacaagttcaagt-aaaattttgattcccaagggaacatacaagttaaaacaagttaatcttagaggtccatgcaatgctccaattg |
42943173 |
T |
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| Q |
300 |
agattcaagttgatggaacaattgaagcacctgct |
334 |
Q |
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| T |
42943174 |
agattcaagttgatggaacaattgaagcacctgct |
42943208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 24243916 - 24243855
Alignment:
| Q |
272 |
cttagaggtccatgcaatgctccaattgagattcaagttgatggaacaattgaagcacctgc |
333 |
Q |
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| T |
24243916 |
cttaaaggtccttgtaaggctcctattgaacttcaagttgatggaacaattcaagcacctgc |
24243855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 24298282 - 24298343
Alignment:
| Q |
272 |
cttagaggtccatgcaatgctccaattgagattcaagttgatggaacaattgaagcacctgc |
333 |
Q |
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| T |
24298282 |
cttaaaggtccttgtaaggctcctattgaacttcaagttgatggaacaattcaagcacctgc |
24298343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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