View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_37 (Length: 348)
Name: NF18809_low_37
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_37 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 1034027 - 1034273
Alignment:
| Q |
16 |
cagataatagggcagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataa |
115 |
Q |
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| T |
1034027 |
cagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataa |
1034126 |
T |
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| Q |
116 |
cagggagacattctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgtattgtagcatccaaggtcgga |
215 |
Q |
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| T |
1034127 |
cagggagacattctacacttctgatccggttgtaggttatacggactatccctttcttgaatgaagaaaacaatgttgtattgtagcatccaaggttgga |
1034226 |
T |
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| Q |
216 |
agtggaacctccatatttaataagctttttctccttgcaaatttgtt |
262 |
Q |
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| T |
1034227 |
agtggaacctccatatttaataagttttttctccttgcaaatttgtt |
1034273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 1044424 - 1044608
Alignment:
| Q |
26 |
ggcagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggagaca |
125 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||| |
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| T |
1044424 |
ggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctcctctcaacaagtataatagggagaca |
1044523 |
T |
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| Q |
126 |
ttctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgtattgtagcatccaagg |
210 |
Q |
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| T |
1044524 |
ttctacatttctgatccggttgttggttacactgactatccctttcttgaatgaagaaaacaatgttgtattgcagcatccaagg |
1044608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 1066037 - 1066197
Alignment:
| Q |
24 |
agggcagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggaga |
123 |
Q |
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|||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||| || |||||||||||||||| |
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| T |
1066037 |
agggcagaccttgttgtatatggtcgtttgttcttagctaatccagatttaccaaagagatttgcacttgatgctcctctgaacaaatataacagggaga |
1066136 |
T |
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| Q |
124 |
cattctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaa |
184 |
Q |
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| T |
1066137 |
cgttctacatttctgatccagttctaggttatactgactacccctttcttgaatgaagaaa |
1066197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 1058942 - 1059116
Alignment:
| Q |
21 |
aatagggcagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacaggg |
120 |
Q |
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| T |
1058942 |
aataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttaatgctcctctaaacaagtataacaggg |
1059041 |
T |
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| Q |
121 |
agacattctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgta |
195 |
Q |
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| T |
1059042 |
cgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
1059116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 1053677 - 1053819
Alignment:
| Q |
21 |
aatagggcagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacaggg |
120 |
Q |
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||||||||||||||| ||| |||||||||||||||| || | ||||||||||| ||||||||||||||||| || |||||||| || || ||||| |||| |
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| T |
1053677 |
aatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctcttaacaagtataataggg |
1053776 |
T |
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| Q |
121 |
agacattctacacttctgatgcggttgtaggttatacggacta |
163 |
Q |
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| T |
1053777 |
agacattctacacttctgatccagttataggttatactgacta |
1053819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 1071764 - 1071921
Alignment:
| Q |
24 |
agggcagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggaga |
123 |
Q |
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|||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| || || ||||||||||||| |
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| T |
1071764 |
agggcagacctagttgtatatggtcgtttgttcttagctaatccagatttgccaaagagatttgcacttgatgctcctctaaacaagtataacagggaga |
1071863 |
T |
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| Q |
124 |
cattctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaag |
181 |
Q |
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| T |
1071864 |
cattttacgtttctgatccagttctaggttatactgactacccttttcttgaatgaag |
1071921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 1047005 - 1047189
Alignment:
| Q |
21 |
aatagggcagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacaggg |
120 |
Q |
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||||||| ||||||||||| ||| | ||||| ||| |||| ||||||||||||||||||||||||||||| || ||||| || || || ||||| | || |
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| T |
1047005 |
aatagggtagatcttgttgcttacgaccgtttattcatagctaatccagatttgccaaagagatttgcacttaatgctcccctaaacaagtataatatgg |
1047104 |
T |
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| Q |
121 |
agacattctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgta-ttgtagcat |
204 |
Q |
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| T |
1047105 |
agacattctgcacttctgatccagttcttggttataccgactacccttttcttgaatgaataaacatatgttgtacttgtagcat |
1047189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 1640517 - 1640373
Alignment:
| Q |
28 |
cagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcactaaacgctcctctcaataaatataacagggagacatt |
127 |
Q |
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|||||||||||| ||||||||| ||||| || | ||||||||||| ||||||||||| || || | ||||||||||| || |||||| |||| ||||| |
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| T |
1640517 |
cagatcttgttgcttatggtcgcttgtttatatctaatccagatttaccaaagagattcgcgctcgatgctcctctcaacaagtataaccgggaaacatt |
1640418 |
T |
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| Q |
128 |
ctacacttctgatgcggttgtaggttatacggactatccctttct |
172 |
Q |
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| T |
1640417 |
ctacacatctgatccggttctcggttatacagactacccttttct |
1640373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 12121406 - 12121338
Alignment:
| Q |
21 |
aatagggcagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgca |
89 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
12121406 |
aataaggcagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca |
12121338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 65864 - 65937
Alignment:
| Q |
16 |
cagataatagggcagatcttgttgtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgca |
89 |
Q |
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|||| |||| |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |
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| T |
65864 |
cagaaaataaggcagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca |
65937 |
T |
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