View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_38 (Length: 344)
Name: NF18809_low_38
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_38 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 344
Target Start/End: Complemental strand, 15001111 - 15000782
Alignment:
| Q |
15 |
agaagaaacaatttaaaagtagaaaattcattattcaccaatctaattttacaagtgagataggatcaatatatatagattatatgatcctatacaagtg |
114 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15001111 |
agaagaaacagtttaaaagtagaaaattcattattcaccaatctaattttacaagtgagataggatcaatatatatagattatttgatcctatacaagtg |
15001012 |
T |
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| Q |
115 |
taactagagcaagctattccccgacaagcttaactaactaaatgcataaccaattaaccgtcaagtggttaattagttacacaaaagtacaatagcttgt |
214 |
Q |
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| T |
15001011 |
taactagagcaagctattccccgacaagcttaactaactaaatgcataaccaattaaccgtcaagtggttaattagttacacaaaagtacaatagcttgt |
15000912 |
T |
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| Q |
215 |
agtacaagtaattgtctaaaaatcacttctttgtacaattaacaattgtgtcacacatttcagccaaatgcacggttcttacaacaacaatgaacttctt |
314 |
Q |
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| T |
15000911 |
agtacaagtaattgtctaaaaatcacttctttgtacaattaacaattgtgtcacacatttcagccaaatgcacggttcttacaacaacaatgaacttctt |
15000812 |
T |
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| Q |
315 |
aatacaaaacaacttatacataaagtaatc |
344 |
Q |
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| T |
15000811 |
aatacaaaacaacttatacataaagtaatc |
15000782 |
T |
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Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 33190261 - 33190169
Alignment:
| Q |
41 |
ttcattattcaccaatctaattttacaagtgagataggatcaatatatatagattatatgatcctatacaagtgtaactagagcaagctattc |
133 |
Q |
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| T |
33190261 |
ttcattattcaccaatctagttttacaagtgagataggatacatgtataaaaattctatgatcctatacaagagtaactagagcaaactattc |
33190169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 28015260 - 28015368
Alignment:
| Q |
83 |
atatatatagattatatgatcctatacaagtgtaactagagcaagctattccccgacaagcttaactaactaaatgcataaccaattaaccgtcaagtgg |
182 |
Q |
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| T |
28015260 |
atatatatagatc-tatgatcttatacaagtgtaactagagtaaactattcatctacaagcttaactaaacaactgcataacaaactaactgccaactag |
28015358 |
T |
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| Q |
183 |
ttaattagtt |
192 |
Q |
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| T |
28015359 |
ttaattagtt |
28015368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 14991975 - 14991878
Alignment:
| Q |
36 |
gaaaattcattattcaccaatctaattttacaagtgagataggatcaatatatatagattatatgatcctatacaagtgtaactagagcaagctattc |
133 |
Q |
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|||| ||||||||||||||| ||| |||||||||||||||| |||| ||| || |||||| |||| |||| || || ||||||||||| ||||||||| |
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| T |
14991975 |
gaaatttcattattcaccaacctagttttacaagtgagataagatccatacatttagattctatgttcctgtataattgtaactagagtaagctattc |
14991878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 15421586 - 15421489
Alignment:
| Q |
36 |
gaaaattcattattcaccaatctaattttacaagtgagataggatcaatatatatagattatatgatcctatacaagtgtaactagagcaagctattc |
133 |
Q |
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|||| ||||||||||||||| ||| |||||||||||||||| |||| ||| || |||||| |||| |||| || || ||||||||||| ||||||||| |
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| T |
15421586 |
gaaatttcattattcaccaacctagttttacaagtgagataagatccatacatttagattctatgttcctgtataattgtaactagagtaagctattc |
15421489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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