View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18809_low_44 (Length: 313)

Name: NF18809_low_44
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18809_low_44
NF18809_low_44
[»] chr7 (49 HSPs)
chr7 (1-313)||(18662204-18662503)
chr7 (105-226)||(34963364-34963485)
chr7 (84-194)||(46096762-46096872)
chr7 (105-225)||(38912884-38913004)
chr7 (97-226)||(7728563-7728692)
chr7 (119-232)||(21275621-21275734)
chr7 (95-226)||(23828868-23829002)
chr7 (100-216)||(38663642-38663758)
chr7 (105-186)||(16831276-16831357)
chr7 (105-232)||(5909068-5909195)
chr7 (127-215)||(25874360-25874448)
chr7 (119-226)||(31188748-31188855)
chr7 (106-226)||(28299688-28299806)
chr7 (97-188)||(46683052-46683143)
chr7 (136-233)||(23797682-23797779)
chr7 (105-198)||(30844089-30844181)
chr7 (250-313)||(18661589-18661652)
chr7 (138-233)||(35720941-35721036)
chr7 (246-308)||(23099994-23100056)
chr7 (110-208)||(40037739-40037836)
chr7 (84-233)||(28197986-28198135)
chr7 (105-185)||(35116895-35116975)
chr7 (118-177)||(42589694-42589753)
chr7 (243-308)||(7318265-7318330)
chr7 (244-305)||(10587069-10587130)
chr7 (251-308)||(10937602-10937659)
chr7 (245-305)||(9574401-9574461)
chr7 (244-308)||(11221206-11221270)
chr7 (244-304)||(21230305-21230365)
chr7 (253-308)||(3734598-3734653)
chr7 (6-41)||(18662168-18662203)
chr7 (107-226)||(28024508-28024626)
chr7 (95-177)||(28517784-28517867)
chr7 (243-313)||(2563810-2563879)
chr7 (244-306)||(15869588-15869650)
chr7 (11-41)||(21127771-21127801)
chr7 (106-176)||(30424888-30424958)
chr7 (97-226)||(43189795-43189925)
chr7 (243-308)||(2350789-2350854)
chr7 (109-205)||(5000351-5000448)
chr7 (243-308)||(5530013-5530078)
chr7 (251-308)||(8054100-8054157)
chr7 (236-313)||(9500429-9500506)
chr7 (108-185)||(18797799-18797876)
chr7 (180-233)||(36595366-36595419)
chr7 (161-233)||(1506553-1506625)
chr7 (137-217)||(24463743-24463823)
chr7 (252-308)||(26134790-26134845)
chr7 (97-145)||(29559215-29559263)
[»] chr2 (29 HSPs)
chr2 (108-226)||(32838629-32838747)
chr2 (111-216)||(19002749-19002854)
chr2 (107-226)||(41311692-41311811)
chr2 (109-208)||(1388473-1388572)
chr2 (122-229)||(38721626-38721732)
chr2 (109-225)||(41252745-41252862)
chr2 (105-188)||(38042431-38042514)
chr2 (97-226)||(752138-752267)
chr2 (109-226)||(4640181-4640298)
chr2 (103-176)||(12880130-12880203)
chr2 (105-174)||(13799783-13799852)
chr2 (245-307)||(28770486-28770548)
chr2 (97-176)||(39575461-39575540)
chr2 (243-313)||(29719268-29719338)
chr2 (167-225)||(33847488-33847546)
chr2 (108-226)||(41284593-41284711)
chr2 (243-305)||(45621926-45621988)
chr2 (251-308)||(17743518-17743575)
chr2 (243-308)||(25888262-25888327)
chr2 (251-308)||(27909161-27909218)
chr2 (111-168)||(40349639-40349696)
chr2 (105-210)||(44949232-44949337)
chr2 (105-185)||(33058799-33058879)
chr2 (106-233)||(1852822-1852949)
chr2 (251-313)||(19200172-19200233)
chr2 (252-305)||(30411679-30411732)
chr2 (136-221)||(40462108-40462193)
chr2 (125-177)||(3773046-3773098)
chr2 (105-157)||(31663598-31663650)
[»] chr3 (30 HSPs)
chr3 (109-226)||(45153502-45153619)
chr3 (105-226)||(44720854-44720975)
chr3 (112-226)||(23070829-23070943)
chr3 (106-232)||(52685087-52685213)
chr3 (139-225)||(1402014-1402100)
chr3 (105-226)||(23057092-23057213)
chr3 (96-182)||(54987227-54987313)
chr3 (251-308)||(19908307-19908364)
chr3 (105-221)||(23090665-23090780)
chr3 (109-208)||(31437815-31437913)
chr3 (106-172)||(4204041-4204107)
chr3 (235-309)||(11533016-11533090)
chr3 (139-226)||(41835646-41835734)
chr3 (245-308)||(10917912-10917975)
chr3 (112-226)||(23073643-23073757)
chr3 (243-308)||(21301910-21301975)
chr3 (243-308)||(21303396-21303461)
chr3 (236-308)||(21325325-21325397)
chr3 (252-308)||(22349410-22349466)
chr3 (99-233)||(31375489-31375623)
chr3 (148-208)||(1712387-1712446)
chr3 (108-232)||(14030273-14030397)
chr3 (245-308)||(821556-821619)
chr3 (254-313)||(10923150-10923209)
chr3 (127-226)||(36473135-36473234)
chr3 (127-233)||(48600598-48600702)
chr3 (243-305)||(20429702-20429764)
chr3 (252-308)||(12759388-12759444)
chr3 (97-173)||(25985419-25985495)
chr3 (132-208)||(43767303-43767379)
[»] chr1 (30 HSPs)
chr1 (105-233)||(1609707-1609834)
chr1 (75-233)||(36995197-36995356)
chr1 (105-221)||(2748558-2748674)
chr1 (76-234)||(25129813-25129971)
chr1 (107-234)||(18407444-18407568)
chr1 (105-184)||(26724331-26724411)
chr1 (105-184)||(26732448-26732528)
chr1 (99-231)||(36271192-36271324)
chr1 (162-233)||(15646911-15646982)
chr1 (151-241)||(45584304-45584394)
chr1 (97-226)||(34620606-34620735)
chr1 (127-208)||(8472364-8472442)
chr1 (236-307)||(9787922-9787993)
chr1 (251-306)||(21988026-21988081)
chr1 (251-309)||(15544007-15544065)
chr1 (251-313)||(21449089-21449151)
chr1 (99-165)||(39527053-39527119)
chr1 (243-308)||(3591695-3591760)
chr1 (136-205)||(42826601-42826670)
chr1 (245-308)||(16359865-16359927)
chr1 (95-158)||(51960000-51960063)
chr1 (127-205)||(2507007-2507085)
chr1 (106-176)||(3126236-3126305)
chr1 (108-158)||(15647259-15647309)
chr1 (251-313)||(25405667-25405729)
chr1 (251-308)||(24306347-24306404)
chr1 (105-158)||(32161583-32161636)
chr1 (132-177)||(44698075-44698120)
chr1 (252-308)||(17610298-17610354)
chr1 (243-307)||(24267825-24267889)
[»] chr4 (35 HSPs)
chr4 (73-226)||(3167124-3167277)
chr4 (105-232)||(8839671-8839797)
chr4 (97-225)||(41899075-41899203)
chr4 (105-225)||(6167807-6167927)
chr4 (109-216)||(5168526-5168633)
chr4 (126-233)||(38868830-38868937)
chr4 (98-225)||(39144230-39144357)
chr4 (108-205)||(26683635-26683732)
chr4 (119-226)||(14193856-14193963)
chr4 (109-231)||(24858618-24858741)
chr4 (105-194)||(3784077-3784166)
chr4 (243-308)||(19562220-19562285)
chr4 (127-176)||(26184625-26184674)
chr4 (244-308)||(12578308-12578372)
chr4 (105-165)||(48051730-48051790)
chr4 (250-313)||(13908853-13908916)
chr4 (245-308)||(14648889-14648952)
chr4 (108-226)||(24970950-24971068)
chr4 (244-313)||(12839817-12839886)
chr4 (246-307)||(13128917-13128978)
chr4 (243-308)||(21323917-21323982)
chr4 (136-200)||(36832842-36832905)
chr4 (100-175)||(4197190-4197265)
chr4 (151-226)||(36414758-36414833)
chr4 (148-226)||(42563388-42563467)
chr4 (119-194)||(53333557-53333632)
chr4 (243-305)||(19882632-19882694)
chr4 (250-307)||(17709756-17709813)
chr4 (125-225)||(24943567-24943668)
chr4 (118-233)||(37660043-37660157)
chr4 (252-308)||(11700611-11700667)
chr4 (243-307)||(17951339-17951403)
chr4 (243-307)||(17955191-17955255)
chr4 (252-308)||(19492742-19492798)
chr4 (256-308)||(22526369-22526421)
[»] scaffold0236 (1 HSPs)
scaffold0236 (116-232)||(20145-20261)
[»] chr8 (19 HSPs)
chr8 (103-226)||(34496876-34496999)
chr8 (137-226)||(42631687-42631776)
chr8 (108-233)||(42350374-42350499)
chr8 (114-226)||(44814057-44814167)
chr8 (105-195)||(28827600-28827691)
chr8 (99-233)||(14955209-14955343)
chr8 (243-308)||(24110697-24110762)
chr8 (244-308)||(29382403-29382467)
chr8 (243-306)||(24114326-24114389)
chr8 (253-308)||(13315034-13315089)
chr8 (167-229)||(8871174-8871236)
chr8 (119-205)||(44063091-44063177)
chr8 (243-308)||(5850933-5850998)
chr8 (243-308)||(14528141-14528206)
chr8 (243-308)||(17976611-17976676)
chr8 (244-293)||(30235370-30235419)
chr8 (256-308)||(30783783-30783835)
chr8 (180-232)||(38967820-38967872)
chr8 (97-145)||(39082529-39082577)
[»] scaffold0016 (1 HSPs)
scaffold0016 (89-216)||(79941-80068)
[»] chr6 (20 HSPs)
chr6 (105-188)||(30456788-30456871)
chr6 (107-232)||(8082454-8082578)
chr6 (160-226)||(29481915-29481981)
chr6 (243-308)||(9726014-9726079)
chr6 (243-308)||(12183373-12183438)
chr6 (97-232)||(23578756-23578891)
chr6 (243-313)||(21907424-21907494)
chr6 (243-308)||(17729144-17729209)
chr6 (243-308)||(21672477-21672542)
chr6 (111-232)||(31535655-31535780)
chr6 (161-224)||(3686792-3686855)
chr6 (106-233)||(33605056-33605183)
chr6 (93-167)||(6067493-6067567)
chr6 (243-308)||(8241269-8241334)
chr6 (243-308)||(21679893-21679958)
chr6 (243-308)||(25927345-25927410)
chr6 (119-208)||(31597531-31597620)
chr6 (252-308)||(9516786-9516842)
chr6 (268-308)||(22410369-22410409)
chr6 (253-305)||(23844510-23844562)
[»] chr5 (21 HSPs)
chr5 (105-207)||(1355380-1355482)
chr5 (97-233)||(1863092-1863228)
chr5 (106-225)||(15965795-15965914)
chr5 (140-221)||(19366976-19367056)
chr5 (127-216)||(38370531-38370620)
chr5 (127-212)||(9515533-9515617)
chr5 (144-232)||(36302600-36302693)
chr5 (109-222)||(36302140-36302255)
chr5 (127-226)||(4462556-4462655)
chr5 (127-226)||(6539796-6539895)
chr5 (127-196)||(1352367-1352436)
chr5 (251-308)||(15375924-15375981)
chr5 (244-308)||(24852214-24852278)
chr5 (252-305)||(17185464-17185517)
chr5 (160-232)||(21044490-21044562)
chr5 (136-176)||(26449264-26449304)
chr5 (105-155)||(27695129-27695179)
chr5 (243-308)||(15469928-15469993)
chr5 (243-308)||(17171595-17171660)
chr5 (251-308)||(19004268-19004325)
chr5 (127-176)||(19608821-19608870)
[»] scaffold0005 (1 HSPs)
scaffold0005 (245-308)||(168340-168403)
[»] scaffold0024 (1 HSPs)
scaffold0024 (243-308)||(39576-39641)
[»] scaffold0838 (1 HSPs)
scaffold0838 (252-308)||(2371-2427)
[»] scaffold0832 (1 HSPs)
scaffold0832 (252-308)||(2402-2458)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 49)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 18662204 - 18662503
Alignment:
Q  1 atcttgcactaaggactaataaggagtatggggtcgtccatgttatgtattttttggtagttaggagtagtattagggtttttctaaaaagtgtctttag 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  18662204 atcttgcactaaggactaataaggagtatggggtcgtctatgttatatattttttggtagttaggagtagtattagggttttgctaaaaagtgtttttag 18662303  T
Q  101 ggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaaga 200  Q
    ||  |||||||||||||||||||||||||| |||||||||||||||||||||             |||||||||||||||||||||||||||||||||||    
T  18662304 ggtacttgttaaggatacaaaaatgaaaatcattgataaattttaagtagaa-------------aaagtttcaatacattgaatgcatcattttcaaga 18662390  T
Q  201 caaaatttattctttaaacttcttaataagtgctctgatgaacggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatc 300  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||  ||||| |||||||| || |||| ||||||||| ||||||    
T  18662391 caaaatttattctttaaactttttaataagtgctctgatgatcggattaagcaagtgtatcaaatcgtttaccaagcactaaagtgataagtagagtatc 18662490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 34963364 - 34963485
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| |||||||  || ||||||||||| ||||| ||||| |||    
T  34963364 cttgttaaggatacaaaaatgaaaataattgataaattttaagtagaaaaagtcacttttcaaagttttcatgcattgaatgcaccatttccaagataaa 34963463  T
Q  205 atttattctttaaacttcttaa 226  Q
    ||||||| ||||||||||||||    
T  34963464 atttattttttaaacttcttaa 34963485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 46096872 - 46096762
Alignment:
Q  84 ctaaaaagtgtctttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattga 183  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| || ||||| || ||||||||| ||||||| || |||    
T  46096872 ctaacaagtgtctttagggcgcatgttaaagatacaaaaatgaaaataattgataaattttaaataaaaaaaattactttttaaaatttcaatgcactga 46096773  T
Q  184 atgcatcattt 194  Q
    ||||| |||||    
T  46096772 atgcaccattt 46096762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 38912884 - 38913004
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    ||||||||  ||||| ||||  |||| ||||||||||||||| |||||||||||   ||||||||||||||| ||||||||||| ||||| ||||||||     
T  38912884 cttgttaaaaatacacaaatagaaataattgataaattttaaatagaaaaagttgtattttaaagtttcaatgcattgaatgcaccatttccaagacaac 38912983  T
Q  205 atttattctttaaacttctta 225  Q
    ||||||||||||| |||||||    
T  38912984 atttattctttaatcttctta 38913004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 7728563 - 7728692
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttc 196  Q
    |||||||  ||| ||||||||||||||| ||||| ||||||||||||||| || |||||||| | ||||||| |||||||  ||| |||||| ||||| |    
T  7728563 ttagggcatttgataaggatacaaaaataaaaataattgataaattttaattataaaaagttacattttaaaatttcaatgaattaaatgcaccatttcc 7728662  T
Q  197 aagacaaaatttattctttaaacttcttaa 226  Q
    ||||||||| ||||| ||||| ||||||||    
T  7728663 aagacaaaaattattttttaatcttcttaa 7728692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 21275621 - 21275734
Alignment:
Q  119 aaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaa 218  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||| ||| ||||||||||| | |||  |||||||| ||| ||||||||     
T  21275621 aaaaatgaaaataattgatatattttaagtagaaaaagttgctttttaaaattttaatgcattgaatgcaccttttctaagacaaactttcttctttaag 21275720  T
Q  219 cttcttaataagtg 232  Q
    |||||||| |||||    
T  21275721 cttcttaagaagtg 21275734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 23828868 - 23829002
Alignment:
Q  95 ctttagggcgcttgttaaggatacaaaaatgaaaattat---tgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatca 191  Q
    |||| |||| |||||||| |||||||||||  |||| ||   |||||||| |||||||||||| ||| |||| |||| ||||||||||||||||||||||    
T  23828868 ctttggggcacttgttaaagatacaaaaatagaaataatagttgataaatgttaagtagaaaatgttactttctaaaatttcaatacattgaatgcatca 23828967  T
Q  192 ttttcaagacaaaatttattctttaaacttcttaa 226  Q
    |||| ||||||||| || |||||||  ||||||||    
T  23828968 tttttaagacaaaacttcttctttagtcttcttaa 23829002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 100 - 216
Target Start/End: Complemental strand, 38663758 - 38663642
Alignment:
Q  100 gggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaag 199  Q
    |||| ||||||||||||||||||||  |||| ||||||||||||||| || |||||||| ||||||||||||||||| |||| ||| ||  ||||| ||     
T  38663758 gggcacttgttaaggatacaaaaatagaaataattgataaattttaaatataaaaagttactttttaaagtttcaatgcattaaatacacaatttttaaa 38663659  T
Q  200 acaaaatttattcttta 216  Q
    ||||||||| |||||||    
T  38663658 acaaaatttcttcttta 38663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 16831357 - 16831276
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatg 186  Q
    |||||||||||||||||||||||||| |||||||||||| || || |||||||| ||||||||||||| ||| |||||||||    
T  16831357 cttgttaaggatacaaaaatgaaaataattgataaatttcaaataaaaaaagttactttttaaagttttaatgcattgaatg 16831276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 5909195 - 5909068
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    |||| ||||||| ||||||| ||||| |||||||| ||||| ||  ||||||||  |||| ||||||||||  |||||||||||||| || |||||||||    
T  5909195 cttggtaaggattcaaaaataaaaataattgataatttttatgttaaaaaagttatttttcaaagtttcaaggcattgaatgcatcacttccaagacaaa 5909096  T
Q  205 atttattctttaaacttcttaataagtg 232  Q
     ||| ||||||| ||||||||| |||||    
T  5909095 gtttcttctttagacttcttaacaagtg 5909068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 25874360 - 25874448
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattcttt 215  Q
    |||| ||||||||||||||||||||| | ||| | |||||||||||||||| ||||||||||| ||||||||  |||||||| ||||||    
T  25874360 aaataattgataaattttaagtagaacatgttacattttaaagtttcaatatattgaatgcattattttcaaatcaaaatttcttcttt 25874448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 31188748 - 31188855
Alignment:
Q  119 aaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaa 218  Q
    |||||| ||||| ||| |||| ||||| |||||||| ||| ||||||||| |||||||   |||||||||||||||||||||||||| ||  | ||||||    
T  31188748 aaaaataaaaataatttataagttttatgtagaaaatgttactttttaaactttcaatgtcttgaatgcatcattttcaagacaaaacttcctttttaaa 31188847  T
Q  219 cttcttaa 226  Q
    ||||||||    
T  31188848 cttcttaa 31188855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 28299806 - 28299688
Alignment:
Q  106 ttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaa 205  Q
    ||||||||||| ||||| | ||||| |||||||| ||||   || ||||| || ||||||||| |||||||||||| ||||||||||||  || ||||||    
T  28299806 ttgttaaggattcaaaa-taaaaataattgataagttttttttaaaaaaa-ttactttttaaaatttcaatacattaaatgcatcatttctaaaacaaaa 28299709  T
Q  206 tttattctttaaacttcttaa 226  Q
    |||||||||||||||| ||||    
T  28299708 tttattctttaaactttttaa 28299688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 46683143 - 46683052
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgca 188  Q
    |||||||  ||||||| ||| |||||||| |||| |||| ||||||||||||| |||||||| | ||||||||||||||| |||||| ||||    
T  46683143 ttagggcatttgttaaagatgcaaaaatggaaataattggtaaattttaagtataaaaagttacattttaaagtttcaatgcattgagtgca 46683052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 23797779 - 23797682
Alignment:
Q  136 ataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaataagtgc 233  Q
    |||||||||| ||||||||| || ||||||||| ||| |||  ||||||| |||||||  ||||| |||||||  |||||||||||||||| ||||||    
T  23797779 ataaattttaggtagaaaaaattactttttaaatttttaatgtattgaatacatcattcccaagataaaattttctctttaaacttcttaacaagtgc 23797682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 30844089 - 30844181
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaa 198  Q
    ||||||||| ||||||||||| |||| |||| ||||||||||||||||| || | ||| | ||| ||||||| |||||||| ||||||||||||    
T  30844089 cttgttaagaatacaaaaatgtaaataattggtaaattttaagtagaaagag-tacttctaaaaatttcaatgcattgaatacatcattttcaa 30844181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 18661589 - 18661652
Alignment:
Q  250 agcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    ||||||||||| ||||| |||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  18661589 agcaagtgtaccaaatcgtttaccaaacaataaagtgataagtagagtattgtatccacaagga 18661652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 35721036 - 35720941
Alignment:
Q  138 aaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaataagtgc 233  Q
    |||||||| ||||| |||||| ||||||||| ||||||||  ||||||||||||||  ||| | |||||||  | |||||||||||||| ||||||    
T  35721036 aaattttatgtagataaagttactttttaaactttcaatatgttgaatgcatcattcccaaaataaaattttctttttaaacttcttaacaagtgc 35720941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 23100056 - 23099994
Alignment:
Q  246 attaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||| |||||||||| ||||| ||||||||| |||||| ||||||||| ||||||||||||||    
T  23100056 attaggcaagtgtaccaaatcgtttaccaaataataaagtgataagtagagtatcgtatccac 23099994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 40037836 - 40037739
Alignment:
Q  110 taaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattt 208  Q
    |||| ||| |||||| ||||| ||||||||||||||| ||||||| || |  ||||||||||||||| ||||||||  |||||||| |||| |||||||    
T  40037836 taagaataaaaaaataaaaataattgataaattttaaatagaaaa-gtattattttaaagtttcaatgcattgaatatatcatttttaagataaaattt 40037739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 28197986 - 28198135
Alignment:
Q  84 ctaaaaagtgtctttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattga 183  Q
    |||| ||||| | |||| || |||||||||||| |||||  | |||| ||| ||||| |||| ||||||||||||||||||| ||||||||||   ||||    
T  28197986 ctaacaagtgcccttagtgcacttgttaaggattcaaaagaggaaataatttataaaatttatgtagaaaaagtttctttttgaagtttcaatgtcttga 28198085  T
Q  184 atgcatcattttcaagacaaaatttattctttaaacttcttaataagtgc 233  Q
    || ||  |||| ||||| ||| ||| ||||||  |||||| || ||||||    
T  28198086 atacacaatttccaagaaaaagtttcttctttggacttctaaacaagtgc 28198135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 35116975 - 35116895
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaat 185  Q
    |||||||||||| |||||| | |||| ||| |||||||||| ||||||||| || |||||| ||||||||||  |||||||    
T  35116975 cttgttaaggattcaaaaaaggaaataatttataaattttatgtagaaaaatttcctttttgaagtttcaatgtattgaat 35116895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 42589694 - 42589753
Alignment:
Q  118 caaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaata 177  Q
    |||||||||||||||||| ||||||||| ||| ||||||||  ||||| |||||||||||    
T  42589694 caaaaatgaaaattattggtaaattttatgtaaaaaaagttgtttttttaagtttcaata 42589753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 7318265 - 7318330
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||| | ||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  7318265 cggattaggcaagtgtaccatatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 7318330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 10587130 - 10587069
Alignment:
Q  244 ggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatc 305  Q
    |||||| |||||||||| ||||| ||||||||  |||||| ||||||||| |||||||||||    
T  10587130 ggattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatc 10587069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 10937602 - 10937659
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||||  ||||| ||||||||  |||||| ||||||||||||||||||||||||    
T  10937602 gcaagtgtatcaaatcgtttaccaagtaataaagtgataagtatagtatcgtatccac 10937659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 9574401 - 9574461
Alignment:
Q  245 gattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatc 305  Q
    ||||| |||||||||| ||||| ||||||||  |||||| ||||||||| |||||||||||    
T  9574401 gattaggcaagtgtactaaatcgtttaccaaggaataaagtgataagtagagtatcgtatc 9574461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 11221270 - 11221206
Alignment:
Q  244 ggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||||||||||| ||||| ||||| ||  |||||| ||||||||| ||||| ||||||||    
T  11221270 ggattaagcaagtgtaccaaatcgtttactaagtaataaattgataagtagagtattgtatccac 11221206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 21230305 - 21230365
Alignment:
Q  244 ggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtat 304  Q
    |||||| |||||| ||  ||||| ||||||||| |||||||||||||||| ||||||||||    
T  21230305 ggattaggcaagtatatcaaatcgtttaccaaataataaaatgataagtagagtatcgtat 21230365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 3734598 - 3734653
Alignment:
Q  253 aagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||| |||| |||||||||  |||||| ||||||||| ||||||||||||||    
T  3734598 aagtgtaccaaattttttaccaagtaataaagtgataagtagagtatcgtatccac 3734653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 18662168 - 18662203
Alignment:
Q  6 gcactaaggactaataaggagtatggggtcgtccat 41  Q
    |||||||||| |||||||||||||||||||||||||    
T  18662168 gcactaaggagtaataaggagtatggggtcgtccat 18662203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 28024626 - 28024508
Alignment:
Q  107 tgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaat 206  Q
    ||||||||||  ||||||| |||  |||| ||||||||| || ||||| ||| ||||||||  |||||||| ||||||| ||  |||||||||||||| |    
T  28024626 tgttaaggatttaaaaatggaaacaattgctaaattttatgttgaaaa-gttgctttttaatatttcaatagattgaatacacaattttcaagacaaagt 28024528  T
Q  207 ttattctttaaacttcttaa 226  Q
    || | |||| | ||||||||    
T  28024527 ttctgctttgagcttcttaa 28024508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 28517867 - 28517784
Alignment:
Q  95 ctttagggcgcttgttaaggatac-aaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaata 177  Q
    ||||||||| |||||||||||| | ||||||| |||| |||| ||||||| | ||| |||||||| ||||||||  ||||||||    
T  28517867 ctttagggcacttgttaaggattcaaaaaatggaaataattgttaaatttcatgtaaaaaaagttgctttttaatctttcaata 28517784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 2563810 - 2563879
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    ||||||| |||||||||| ||||| ||||||||  |||||| || |||||| |||||||||||||| ||||    
T  2563810 cggattatgcaagtgtaccaaatcgtttaccaagtaataaagtg-taagtagagtatcgtatccacaagga 2563879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 15869588 - 15869650
Alignment:
Q  244 ggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatcc 306  Q
    |||||| |||||||||  ||||| ||||||||  |||||| ||||||||| ||||||||||||    
T  15869588 ggattaggcaagtgtatcaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 15869650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 21127771 - 21127801
Alignment:
Q  11 aaggactaataaggagtatggggtcgtccat 41  Q
    |||||||||||||||||||||||||||||||    
T  21127771 aaggactaataaggagtatggggtcgtccat 21127801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 30424958 - 30424888
Alignment:
Q  106 ttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaat 176  Q
    |||||||||||| ||||||| |||  |||| ||| ||| | ||||||||||||||||||| | ||||||||    
T  30424958 ttgttaaggataaaaaaatggaaacaattgctaactttcatgtagaaaaagtttctttttgatgtttcaat 30424888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 43189925 - 43189795
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaa-gtttctttttaaagtttcaatacattgaatgcatcatttt 195  Q
    ||||||| || ||||| ||| |||||||  || | ||| |||||||||| ||| ||||| ||| ||||||||| |||||||  ||||| | ||||||| |    
T  43189925 ttagggcactagttaacgattcaaaaatagaagtaatttataaattttatgtaaaaaaaagttactttttaaattttcaatgtattgactacatcattct 43189826  T
Q  196 caagacaaaatttattctttaaacttcttaa 226  Q
    ||||| |||||||  | | ||||||||||||    
T  43189825 caagataaaatttcctatgtaaacttcttaa 43189795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 2350854 - 2350789
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||| ||||| ||||||||  |||||| || |||||| | ||||||||||||    
T  2350854 cggattaggcaagtgtaccaaatcatttaccaagtaataaactgctaagtagattatcgtatccac 2350789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 5000448 - 5000351
Alignment:
Q  109 ttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaa-gtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaa 205  Q
    ||||||||  ||||||  |||| ||| |||| ||||| ||| ||||| ||| ||||||||| |||||||   ||||||||||||||| ||||||||||    
T  5000448 ttaaggatttaaaaatagaaataatttataagttttatgtaaaaaaatgttactttttaaactttcaatgtcttgaatgcatcatttccaagacaaaa 5000351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 5530013 - 5530078
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| ||| |||||| ||||  ||||||||  |||||||||||||||| || |||||||||||    
T  5530013 cggattaggcaggtgtaccaaattgtttaccaagtaataaaatgataagtaaagcatcgtatccac 5530078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 8054157 - 8054100
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||||| ||||| ||||||||  |||||| |||||| || ||||||||||||||    
T  8054157 gcaagtgtaccaaatcgtttaccaagtaataaagtgataattagagtatcgtatccac 8054100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 9500429 - 9500506
Alignment:
Q  236 tgatgaacggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    |||||| || |||| |||||||||||||||| ||||||||  |||||  |||| | || |||||||||||||| ||||    
T  9500429 tgatgatcgaattaggcaagtgtacaaaatcatttaccaagtaataatgtgatcattagagtatcgtatccacaagga 9500506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 18797799 - 18797876
Alignment:
Q  108 gttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaat 185  Q
    ||||||||| |||||| |||||| ||| |||||||||| |||  ||| |||  ||||| |||||||||||| ||||||    
T  18797799 gttaaggattcaaaaaagaaaatgatttataaattttatgtaataaatgttctttttttaagtttcaatacgttgaat 18797876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 36595419 - 36595366
Alignment:
Q  180 ttgaatgcatcattttcaagacaaaatttattctttaaacttcttaataagtgc 233  Q
    ||||||||||||||| |||||||||||||  |||||| |||||| || ||||||    
T  36595419 ttgaatgcatcatttccaagacaaaatttcctctttagacttctaaagaagtgc 36595366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 1506625 - 1506553
Alignment:
Q  161 tttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaataagtgc 233  Q
    |||||||  ||||||||  |||||||||| |||||||| | |||||||||  ||| | |||||||||||||||    
T  1506625 tttttaatatttcaataggttgaatgcataattttcaaaataaaatttatattttgagcttcttaataagtgc 1506553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 24463743 - 24463823
Alignment:
Q  137 taaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaa 217  Q
    ||||| ||| ||| ||||| || ||||| ||| ||| |||||||||||||||  |||| ||||||||||||| || |||||    
T  24463743 taaatattatgtaaaaaaaattacttttcaaaatttgaatacattgaatgcactatttccaagacaaaatttcttttttaa 24463823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 26134845 - 26134790
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||| ||||| ||||||||  ||||||||| |||||| ||||||||||||||    
T  26134845 caagtgtaccaaatcgtttaccaagtaataaaatg-taagtagagtatcgtatccac 26134790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 29559263 - 29559215
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaatttta 145  Q
    ||||||| |||||||||||| |||||||  |||| ||||||||||||||    
T  29559263 ttagggcacttgttaaggattcaaaaatataaataattgataaatttta 29559215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 32838629 - 32838747
Alignment:
Q  108 gttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatt 207  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||| ||| | ||||||||||||||| ||||||||||||||||| ||||||||||||    
T  32838629 gttaaggatacaaaaatgaaaataattgataaattttaaatagaaaatgttacattttaaagtttcaatgcattgaatgcatcatttccaagacaaaatt 32838728  T
Q  208 tattctttaaacttcttaa 226  Q
    | ||||||||  |||||||    
T  32838729 tcttctttaattttcttaa 32838747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 19002749 - 19002854
Alignment:
Q  111 aaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttat 210  Q
    |||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||| ||||| ||||||||| ||| |    
T  19002749 aaggatactaaaatgaaaataattgataaattttaagtagaaaaatttactttttaaaatttcaatgcattgaatgcaccatttccaagacaaagtttct 19002848  T
Q  211 tcttta 216  Q
    ||||||    
T  19002849 tcttta 19002854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 41311811 - 41311692
Alignment:
Q  107 tgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaat 206  Q
    |||||||||| |||||||| |||| ||| |||||||||| ||||||||| || ||||||||| |||||||   || ||||||| |||||||| |||||||    
T  41311811 tgttaaggattcaaaaatgtaaatgatttataaattttatgtagaaaaaattactttttaaactttcaatttgttaaatgcataattttcaaaacaaaat 41311712  T
Q  207 ttattctttaaacttcttaa 226  Q
    ||  ||||||||||||||||    
T  41311711 tttctctttaaacttcttaa 41311692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 1388473 - 1388572
Alignment:
Q  109 ttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattt 208  Q
    |||||||||||||||| ||||| || |||||||||||| || |||| ||| |||||||| |||| ||| ||||||||| |||||||||||||||| ||||    
T  1388473 ttaaggatacaaaaataaaaataatagataaattttaaataaaaaaggttactttttaatgttttaatgcattgaatgtatcattttcaagacaacattt 1388572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 38721626 - 38721732
Alignment:
Q  122 aatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaactt 221  Q
    ||||||||| ||||||||||||||| || ||||||||  ||||||||||||||||||||| ||| |||||||||| | |  ||| || ||||||||||||    
T  38721626 aatgaaaataattgataaattttaaataaaaaaagttaatttttaaagtttcaatacatt-aatacatcattttcgaaatgaaaattcttctttaaactt 38721724  T
Q  222 cttaataa 229  Q
     |||||||    
T  38721725 tttaataa 38721732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 41252745 - 41252862
Alignment:
Q  109 ttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagttt-ctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatt 207  Q
    ||||| ||||| ||||  |||| |||||| |||||||||||||||||  || | ||||||||||||||| ||||||||||||||||| |||||||| ||     
T  41252745 ttaagaatacacaaatacaaataattgatgaattttaagtagaaaaaaattacattttaaagtttcaatgcattgaatgcatcatttccaagacaacata 41252844  T
Q  208 tattctttaaacttctta 225  Q
    | |||||||  |||||||    
T  41252845 tcttctttagtcttctta 41252862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 38042431 - 38042514
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgca 188  Q
    ||||||||||||||| ||||  |||| |||||||||||||||||| |||| ||| |||||| |||||||||| || ||||||||    
T  38042431 cttgttaaggatacataaatagaaataattgataaattttaagtacaaaaggttacttttttaagtttcaatgcaatgaatgca 38042514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 752138 - 752267
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttc 196  Q
    ||||||| ||||||||| || | |||||  |||| |||| | | ||||| ||||||||| || |||||| ||||||||||   |||||||||||| |  |    
T  752138 ttagggcacttgttaagaattctaaaatagaaataattggttagttttatgtagaaaaaattactttttcaagtttcaatgtgttgaatgcatcaatccc 752237  T
Q  197 aagacaaaatttattctttaaacttcttaa 226  Q
    |||||||||||| ||||||| |||||||||    
T  752238 aagacaaaatttcttctttagacttcttaa 752267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 4640298 - 4640181
Alignment:
Q  109 ttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattt 208  Q
    ||||||||  |||||||||||| ||| |||| ||||| |||||||||||  ||||||||| ||||||    |||||||||||||| |||||||| |||||    
T  4640298 ttaaggatttaaaaatgaaaataatttataagttttacgtagaaaaagtaactttttaaattttcaacgtgttgaatgcatcattctcaagacataattt 4640199  T
Q  209 attctttaaacttcttaa 226  Q
     ||  |||||||| ||||    
T  4640198 cttaattaaactttttaa 4640181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 12880203 - 12880130
Alignment:
Q  103 cgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaat 176  Q
    |||||||||||||| |||||||| |||| |||||||| ||||| ||||||||| || ||||||||| |||||||    
T  12880203 cgcttgttaaggattcaaaaatggaaataattgataagttttatgtagaaaaaattactttttaaaatttcaat 12880130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 13799783 - 13799852
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttca 174  Q
    ||||||||||||||||||||  |||| |||  |||||||||| ||||||||||| |||||||||||||||    
T  13799783 cttgttaaggatacaaaaatagaaataattagtaaattttaaatagaaaaagttactttttaaagtttca 13799852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 28770548 - 28770486
Alignment:
Q  245 gattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatcca 307  Q
    ||||||||| |||||| ||||| ||||||||| |||||| ||||||||| |||||||||||||    
T  28770548 gattaagcacgtgtaccaaatcctttaccaaataataaagtgataagtagagtatcgtatcca 28770486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 39575461 - 39575540
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaat 176  Q
    ||||||| ||| |||||||| |||||  | |||| ||| |||||||||| ||| ||||||||||||||| ||||||||||    
T  39575461 ttagggcacttattaaggattcaaaagaggaaataatttataaattttatgtataaaaagtttctttttgaagtttcaat 39575540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 29719338 - 29719268
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    ||||||| |||||||||| ||||| ||||||||  |||||| ||||||||| | |||||||||||| ||||    
T  29719338 cggattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagattatcgtatccacaagga 29719268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 33847546 - 33847488
Alignment:
Q  167 aagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttctta 225  Q
    |||||||||| ||||||||||||||||| |||||||| |||| |||||||  |||||||    
T  33847546 aagtttcaatgcattgaatgcatcatttccaagacaacatttcttctttagtcttctta 33847488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 41284593 - 41284711
Alignment:
Q  108 gttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatt 207  Q
    |||||||||  ||||||  |||| ||| |||||||||| |||||||  ||| ||||||||| ||||| |   |||||||||||||||  ||||||||| |    
T  41284593 gttaaggatttaaaaatagaaataatttataaattttatgtagaaagtgttactttttaaactttcagtgtcttgaatgcatcatttctaagacaaaact 41284692  T
Q  208 tattctttaaacttcttaa 226  Q
    | || |||| |||||||||    
T  41284693 ttttttttagacttcttaa 41284711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 45621988 - 45621926
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatc 305  Q
    ||||||||| |||||||||||||| ||||||||  |||||| ||| ||||| |||||||||||    
T  45621988 cggattaagaaagtgtacaaaatcgtttaccaagtaataaagtgagaagtagagtatcgtatc 45621926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 17743575 - 17743518
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  17743575 gcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 17743518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 25888327 - 25888262
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||| ||||  ||||||||  |||||| ||||||||| ||||||||||||||    
T  25888327 cggattaggcaagtgtaccaaattgtttaccaagtaataaagtgataagtacagtatcgtatccac 25888262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 27909218 - 27909161
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  27909218 gcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 27909161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 40349696 - 40349639
Alignment:
Q  111 aaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaa 168  Q
    |||||||||||||||||||| || | ||||||||||||| ||||||||  ||||||||    
T  40349696 aaggatacaaaaatgaaaataatcggtaaattttaagtaaaaaaagttaatttttaaa 40349639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 44949337 - 44949232
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    ||||||||| ||  |||||||||||  |||| ||||||||| |||||||| |||  |||||||  ||||||||  |||||| ||  |||||||||| |||    
T  44949337 cttgttaagaatttaaaaatgaaaacaattgttaaattttacgtagaaaatgttgttttttaatctttcaataagttgaatacacaattttcaagataaa 44949238  T
Q  205 atttat 210  Q
    ||||||    
T  44949237 atttat 44949232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 33058799 - 33058879
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaat 185  Q
    |||||||||||| |||||| | |||| ||| |||||| ||| |||  ||||||||||||||||| | | ||||||||||||    
T  33058799 cttgttaaggattcaaaaaaggaaatgatttataaatcttatgtaataaaagtttctttttaaaatatgaatacattgaat 33058879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 1852949 - 1852822
Alignment:
Q  106 ttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaa 205  Q
    ||||||||||| |||||| |||||  ||||||||||||||  || ||||| || ||||| ||  |||||||| ||||| | ||| |||| ||||| |||     
T  1852949 ttgttaaggattcaaaaaagaaaacaattgataaattttatataaaaaaaattgcttttcaatatttcaatatattgattacataatttccaagataaag 1852850  T
Q  206 tttattctttaaacttcttaataagtgc 233  Q
    ||| |  ||| |||||||||| ||||||    
T  1852849 tttctattttgaacttcttaacaagtgc 1852822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 19200233 - 19200172
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    |||||||||| ||||||||||||||| |||||  ||||||||  |||||||||||||| ||||    
T  19200233 gcaagtgtaccaaatcttttaccaaataataatgtgataagt-gagtatcgtatccacaagga 19200172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 30411679 - 30411732
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatc 305  Q
    ||||||||| |||||||||||||   |||||| ||||||||| |||||||||||    
T  30411679 caagtgtacgaaatcttttaccatgtaataaagtgataagtagagtatcgtatc 30411732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 40462108 - 40462193
Alignment:
Q  136 ataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaactt 221  Q
    |||| ||||| ||||||||| || ||||||||| ||  ||||  ||||||  |||||| ||||||||||||||  |||||||||||    
T  40462108 ataagttttatgtagaaaaaattactttttaaatttctaatatcttgaatatatcattctcaagacaaaattttctctttaaactt 40462193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 3773098 - 3773046
Alignment:
Q  125 gaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaata 177  Q
    |||||| ||| |||||||||| ||||| ||||||  |||||||||||||||||    
T  3773098 gaaaataatttataaattttatgtagataaagttcatttttaaagtttcaata 3773046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 31663598 - 31663650
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagt 157  Q
    |||||||||||| || |||||||||  ||||||||||||||  ||||||||||    
T  31663598 cttgttaaggattcacaaatgaaaacaattgataaattttatatagaaaaagt 31663650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 45153619 - 45153502
Alignment:
Q  109 ttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattt 208  Q
    |||||||||||||| || |||| ||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||| |||||||    
T  45153619 ttaaggatacaaaagtggaaataattgataaattttaagtagaaaaagttactttataaagtttcaatgcattgaatgcaccattttcaagataaaattt 45153520  T
Q  209 attctttaaacttcttaa 226  Q
    |||||||| | |||||||    
T  45153519 attctttagaattcttaa 45153502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 44720975 - 44720854
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    ||||||||||||  ||||||| |||| |||| ||||||||| ||  |||||||| ||||| ||||||| ||| ||||||||||| |||||||||||||||    
T  44720975 cttgttaaggatctaaaaatggaaataattggtaaattttatgttcaaaaagttacttttgaaagttttaatgcattgaatgcaccattttcaagacaaa 44720876  T
Q  205 atttattctttaaacttcttaa 226  Q
    |||| |||| || |||||||||    
T  44720875 atttcttctctagacttcttaa 44720854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 23070943 - 23070829
Alignment:
Q  112 aggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttatt 211  Q
    ||||||||||||||||||| ||||| ||| ||||| || ||||||||  |||||||| ||||||| |||||||| ||||| || ||||| ||||||| ||    
T  23070943 aggatacaaaaatgaaaataattgaaaaaatttaattataaaaagttgttttttaaaatttcaattcattgaatacatcaattacaagataaaatttctt 23070844  T
Q  212 ctttaaacttcttaa 226  Q
    ||||| |||||||||    
T  23070843 ctttagacttcttaa 23070829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 52685087 - 52685213
Alignment:
Q  106 ttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaa 205  Q
    |||||||||||||||||||  |||| |||| |||||||||| |||||||| || |||||||  ||||| || |||||||||||  ||||  ||||  |||    
T  52685087 ttgttaaggatacaaaaatagaaataattgctaaattttaaatagaaaaatttactttttatcgtttctatgcattgaatgcacaatttctaagatgaaa 52685186  T
Q  206 tttattctttaaacttcttaataagtg 232  Q
    ||| |||||||||||||||||||||||    
T  52685187 tttcttctttaaacttcttaataagtg 52685213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 1402014 - 1402100
Alignment:
Q  139 aattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttctta 225  Q
    |||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||| |||||||| |||| |||||||  |||||||    
T  1402014 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 1402100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 23057213 - 23057092
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    |||||| ||||||||||||||||| | ||||| ||| ||||| || |||||||   |||||||||||| ||| |||||||| ||||| || || || |||    
T  23057213 cttgttcaggatacaaaaatgaaattaattgaaaaaatttaattataaaaagtcattttttaaagttttaattcattgaatacatcaattacacgataaa 23057114  T
Q  205 atttattctttaaacttcttaa 226  Q
    |||| |||||||||||||||||    
T  23057113 atttcttctttaaacttcttaa 23057092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 54987227 - 54987313
Alignment:
Q  96 tttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattg 182  Q
    |||||||| ||||||||| || |||||||| |||| | |||||||||||||||||||||| |  ||||||||||||||||| |||||    
T  54987227 tttagggcacttgttaagaatgcaaaaatgtaaataaatgataaattttaagtagaaaaaataactttttaaagtttcaatgcattg 54987313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 19908307 - 19908364
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  19908307 gcaagtgtaccaaatcgtttaccaaataataaaatgataagtatagtatcgtatccac 19908364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 23090780 - 23090665
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    ||||||||||||| |||||| ||| | ||||| |||||| ||||| ||||||||  ||| |||||||||||| |||||||| ||  | ||||||||||||    
T  23090780 cttgttaaggatataaaaataaaagtaattgaaaaattt-aagtataaaaagttattttctaaagtttcaatgcattgaatacactaatttcaagacaaa 23090682  T
Q  205 atttattctttaaactt 221  Q
     ||| ||||||||||||    
T  23090681 tttttttctttaaactt 23090665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 31437913 - 31437815
Alignment:
Q  109 ttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattt 208  Q
    |||| ||||||||||||||||| |||||||| |||||| |||||||||||  |||||||||||| |||  |||||||||   ||||| ||||||||||||    
T  31437913 ttaatgatacaaaaatgaaaataattgataa-ttttaaatagaaaaagttattttttaaagtttgaatgtattgaatgcgctatttttaagacaaaattt 31437815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 4204041 - 4204107
Alignment:
Q  106 ttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagttt 172  Q
    |||||||| |||||||||| ||||| ||||||||||||||| || |||||||| |||||||||||||    
T  4204041 ttgttaagtatacaaaaataaaaataattgataaattttaaataaaaaaagttactttttaaagttt 4204107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 11533090 - 11533016
Alignment:
Q  235 ctgatgaacggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacg 309  Q
    |||||||||||||||| ||||||||| ||| | ||||||||| |||||| ||||||||| |||| ||||||||||    
T  11533090 ctgatgaacggattaaacaagtgtaccaaaacatttaccaaataataaagtgataagtagagtaccgtatccacg 11533016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 41835646 - 41835734
Alignment:
Q  139 aattttaagtagaaaaagtttc-tttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaa 226  Q
    |||||||||||||||||  ||  |||||||||||||||| |||  ||| ||||||||| |||| ||||||| |||||||||||||||||    
T  41835646 aattttaagtagaaaaaaattaatttttaaagtttcaatgcatcaaatacatcattttaaagataaaatttcttctttaaacttcttaa 41835734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 10917912 - 10917975
Alignment:
Q  245 gattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||| |||||||||| ||||| ||||||||| |||||| ||||||||| ||||||||||||||    
T  10917912 gattaggcaagtgtaccaaatcgtttaccaaataataaagtgataagtagagtatcgtatccac 10917975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 23073757 - 23073643
Alignment:
Q  112 aggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttatt 211  Q
    ||||||||||||||||||| ||| | ||| ||||| || ||||||||   ||||||||||||||| |||||||| || || || ||||| ||||||| ||    
T  23073757 aggatacaaaaatgaaaataattaaaaaaatttaattataaaaagttatgttttaaagtttcaattcattgaatacaccaattacaagataaaatttctt 23073658  T
Q  212 ctttaaacttcttaa 226  Q
     |||| |||| ||||    
T  23073657 ttttagactttttaa 23073643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 21301910 - 21301975
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  21301910 cggattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 21301975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 21303461 - 21303396
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||  ||||| ||||||||| |||||||||||||||| ||||||||| ||||    
T  21303461 cggattatgcaagtgtatcaaatcgtttaccaaataataaaatgataagtagagtatcgtagccac 21303396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 21325325 - 21325397
Alignment:
Q  236 tgatgaacggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||| | ||||| |||||||||| ||||  ||||||||  |||||| ||||||||||||||||||||||||    
T  21325325 tgatgatctgattaggcaagtgtaccaaattgtttaccaagtaataaactgataagtatagtatcgtatccac 21325397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 22349410 - 22349466
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||| ||||| ||||||||| |||||| ||||||||| ||||||||||||||    
T  22349410 caagtgtaccaaatcgtttaccaaataataaagtgataagtagagtatcgtatccac 22349466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 31375623 - 31375489
Alignment:
Q  99 agggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaa 198  Q
    ||||| |||||||||||| || ||  | ||||||||  ||||| ||| |||||||| ||| |||||||||||||||||   |||||| ||  |||| |||    
T  31375623 agggcacttgttaaggattcagaagaggaaattatttgtaaatcttatgtagaaaatgttcctttttaaagtttcaatgtgttgaatacacaatttccaa 31375524  T
Q  199 gacaaaatttattctttaaacttcttaataagtgc 233  Q
    || ||||||| || |||| |||||| || ||||||    
T  31375523 gaaaaaatttcttatttagacttctaaacaagtgc 31375489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 1712387 - 1712446
Alignment:
Q  148 tagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattt 208  Q
    |||||||||||  ||| ||||||||||| |||||||||||||||||||||| | |||||||    
T  1712387 tagaaaaagttcttttataaagtttcaa-acattgaatgcatcattttcaataaaaaattt 1712446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 14030273 - 14030397
Alignment:
Q  108 gttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatt 207  Q
    ||||||||| | ||||| ||||| |||| ||| ||||||||| ||||  || |||||| |||||||||    |||||||||||| |  |||||||||| |    
T  14030273 gttaaggattctaaaataaaaataattgttaagttttaagtaaaaaatattacttttttaagtttcaaagttttgaatgcatcaatcccaagacaaaact 14030372  T
Q  208 tattctttaaacttcttaataagtg 232  Q
    | ||||||||  ||||||| |||||    
T  14030373 tcttctttaagtttcttaacaagtg 14030397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 821619 - 821556
Alignment:
Q  245 gattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||| || ||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  821619 gattaagcatgtctaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 821556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 10923150 - 10923209
Alignment:
Q  254 agtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    ||||||| ||||| ||||||||  |||||| |||||| || |||||||||||||||||||    
T  10923150 agtgtaccaaatcatttaccaagtaataaagtgataattacagtatcgtatccacgagga 10923209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 36473135 - 36473234
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaa 226  Q
    |||| ||| |||||||||| |||||||| ||| ||||||||  |||||||   ||||||||||||||| | |||||||| ||  | ||| ||||||||||    
T  36473135 aaataatttataaattttatgtagaaaatgttactttttaatctttcaatgtcttgaatgcatcatttcctagacaaaacttccttttttaacttcttaa 36473234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 48600702 - 48600598
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaa 226  Q
    |||| ||| |||||||||| ||||||||| || |||||||||||||||||  ||||||  ||| |||||||||| ||| ||| || |||  |||||| ||    
T  48600702 aaataatttataaattttacgtagaaaaaattactttttaaagtttcaatgtattgaa--cataattttcaagaaaaagtttcttttttggacttctaaa 48600605  T
Q  227 taagtgc 233  Q
     ||||||    
T  48600604 caagtgc 48600598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 20429702 - 20429764
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatc 305  Q
    ||||||| ||| |||||| ||||  ||||||||  |||||||||||||||| |||||||||||    
T  20429702 cggattaggcatgtgtactaaattgtttaccaagtaataaaatgataagtagagtatcgtatc 20429764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 12759388 - 12759444
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||| ||||  ||||||||  |||||| ||||||||| ||||||||||||||    
T  12759388 caagtgtaccaaattgtttaccaagtaataaagtgataagtagagtatcgtatccac 12759444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 25985495 - 25985419
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttc 173  Q
    |||||||| |||||||||||  ||||||  |||| |||||||| |||||  |||||||||||  ||||||| |||||    
T  25985495 ttagggcgtttgttaaggatttaaaaatagaaataattgataacttttatatagaaaaagttgttttttaatgtttc 25985419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 43767379 - 43767303
Alignment:
Q  132 attgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattt 208  Q
    |||||||||||||| ||||||||| || |||||| | |||| |||   |||||||||  | ||||||||||||||||    
T  43767379 attgataaattttatgtagaaaaaattactttttgatgttttaatgtgttgaatgcacaaatttcaagacaaaattt 43767303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 105 - 233
Target Start/End: Complemental strand, 1609834 - 1609707
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    |||||||| |||||||| || ||||| |||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||    
T  1609834 cttgttaaagatacaaagataaaaataattgataaattttaagtagaaaaaattacattttaa-gtttcaatacattgaatgcatcattttcaagacaaa 1609736  T
Q  205 atttattctttaaacttcttaataagtgc 233  Q
    | || |||||||| |||||||| ||||||    
T  1609735 agttgttctttaatcttcttaacaagtgc 1609707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 75 - 233
Target Start/End: Original strand, 36995197 - 36995356
Alignment:
Q  75 agggtttttctaaaaagtgtctttagggcgcttgttaaggatacaaaaatgaaaattattgataaatttt-aagtagaaaaagtttctttttaaagtttc 173  Q
    ||||| || |||| ||||| | ||||||| ||||||||||||||||||||| |||| |||| |||||||| |||||||||||||| |||| |||| ||||    
T  36995197 agggtcttgctaacaagtgcccttagggcacttgttaaggatacaaaaatggaaataattggtaaatttttaagtagaaaaagttactttataaaatttc 36995296  T
Q  174 aatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaataagtgc 233  Q
    ||| ||||||||||| ||||| ||| ||||||||| ||||||  ||||||||| ||||||    
T  36995297 aatgcattgaatgcaccatttccaaaacaaaatttcttctttggacttcttaacaagtgc 36995356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 2748674 - 2748558
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    |||| ||| |||||||||||  |||| |||||||||||||||||| ||||| || ||||| ||||||||||| |||||||| || |||||| ||||||||    
T  2748674 cttgctaatgatacaaaaatagaaataattgataaattttaagtaaaaaaaattacttttcaaagtttcaatgcattgaattcaccatttttaagacaaa 2748575  T
Q  205 atttattctttaaactt 221  Q
    |||| ||||||| ||||    
T  2748574 atttcttctttagactt 2748558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 234
Target Start/End: Original strand, 25129813 - 25129971
Alignment:
Q  76 gggtttttctaaaaagtgtctttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaa 175  Q
    |||||||  ||| ||||| ||| ||||| ||||||||  ||| | ||||  |||| |||||| |||||||||||||||||||| | ||||||||||||||    
T  25129813 gggttttgttaacaagtgccttcagggcacttgttaaaaatatataaatagaaataattgatgaattttaagtagaaaaagttacattttaaagtttcaa 25129912  T
Q  176 tacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaataagtgct 234  Q
    | ||||||||||| ||||| ||||| || |||| |||||||  |||||||  |||||||    
T  25129913 tgcattgaatgcaccatttccaagataacatttcttctttagtcttcttatcaagtgct 25129971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 234
Target Start/End: Complemental strand, 18407568 - 18407444
Alignment:
Q  107 tgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaat 206  Q
    |||||||||| |||||||  |||| ||||||||  |||| |||||||||  | ||||||||||||||||||||||||||| |||||| |||| ||||| |    
T  18407568 tgttaaggattcaaaaatctaaataattgataa--tttatgtagaaaaaaatactttttaaagtttcaatacattgaatgtatcattctcaaaacaaagt 18407471  T
Q  207 ttattctttaaacttcttaataagtgct 234  Q
    || || ||||||||||| || |||||||    
T  18407470 ttctt-tttaaacttctaaacaagtgct 18407444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 26724411 - 26724331
Alignment:
Q  105 cttgttaaggatacaaaaa-tgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaa 184  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| | ||||| || | ||||||| ||||||| |||||||    
T  26724411 cttgttaaggatacaaaaaatgaaaataattgataaattttaagcacaaaaacttaccttttaaaatttcaatgcattgaa 26724331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 26732528 - 26732448
Alignment:
Q  105 cttgttaaggatacaaaaa-tgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaa 184  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| | ||||| || | ||||||| ||||||| |||||||    
T  26732528 cttgttaaggatacaaaaaatgaaaataattgataaattttaagcacaaaaacttaccttttaaaatttcaatgcattgaa 26732448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 36271324 - 36271192
Alignment:
Q  99 agggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaa 198  Q
    ||||| |||||||| |||  || ||| ||||| |||||||| ||| | ||||||||| ||  |||  ||||||||||| ||||||||| ||||||  |||    
T  36271324 agggcacttgttaatgatttaagaataaaaataattgataagtttcatgtagaaaaaattattttccaaagtttcaatgcattgaatgtatcattcacaa 36271225  T
Q  199 gacaaaatttattctttaaacttcttaataagt 231  Q
     ||||| ||||||||||| ||||||||| ||||    
T  36271224 aacaaagtttattctttagacttcttaacaagt 36271192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 15646982 - 15646911
Alignment:
Q  162 ttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaataagtgc 233  Q
    ||||||||||||||| |||| |||||| ||||| ||||||||||||| |||||||| ||| |||| ||||||    
T  15646982 ttttaaagtttcaatgcattcaatgcaccatttccaagacaaaatttcttctttaatctttttaacaagtgc 15646911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 45584394 - 45584304
Alignment:
Q  151 aaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaataagtgctctgatga 241  Q
    ||||||||  ||||||||||| |||| |||||||| ||| |||||||||| | | ||| ||||||| ||||||||| |||||| |||||||    
T  45584394 aaaaagttattttttaaagttccaatgcattgaatacataattttcaagatatagtttcttctttagacttcttaacaagtgcactgatga 45584304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 34620606 - 34620735
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttc 196  Q
    ||||||| |||||||||||| | |||||  |||| |||| ||| ||||| ||||||||| || |||||| ||||||||||   |||||||||||| |  |    
T  34620606 ttagggcacttgttaaggattctaaaatagaaataattggtaagttttatgtagaaaaaattactttttcaagtttcaatgtgttgaatgcatcaatccc 34620705  T
Q  197 aagacaaaatttattctttaaacttcttaa 226  Q
    ||||| || ||| |||||||  ||||||||    
T  34620706 aagacgaactttcttctttaggcttcttaa 34620735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 8472364 - 8472442
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattt 208  Q
    |||| ||||||||||||||||||||||||||| |    |||||||||||| | ||||||||| ||||| |||||||| ||||    
T  8472364 aaataattgataaattttaagtagaaaaagttac---ataaagtttcaatgctttgaatgcaccatttccaagacaacattt 8472442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 9787993 - 9787922
Alignment:
Q  236 tgatgaacggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatcca 307  Q
    |||||| ||||||| |||||||||| ||||| |||| |||  |||||| ||||||||| |||||||||||||    
T  9787993 tgatgatcggattaggcaagtgtaccaaatcatttagcaagtaataaagtgataagtagagtatcgtatcca 9787922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 21988081 - 21988026
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatcc 306  Q
    |||||||||| ||||| ||||||||| |||||| ||||||||| ||||||||||||    
T  21988081 gcaagtgtaccaaatcctttaccaaataataaagtgataagtagagtatcgtatcc 21988026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 15544065 - 15544007
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacg 309  Q
    |||||||||| ||||| ||||||||  |||||| ||||||||| |||||||||||||||    
T  15544065 gcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacg 15544007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 21449089 - 21449151
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    |||||||||| ||||| ||||||||  |||||| ||||||||| |||||||||||||| ||||    
T  21449089 gcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacaagga 21449151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 39527119 - 39527053
Alignment:
Q  99 agggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttcttttt 165  Q
    ||||| |||||||||||| ||||| || |||| || ||||||||||| |||||||||||| ||||||    
T  39527119 agggcacttgttaaggattcaaaattggaaataatcgataaattttatgtagaaaaagttccttttt 39527053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 3591760 - 3591695
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||||||||| |||| |||  |||||| |||||| || ||||||||||||||    
T  3591760 cggattaggcaagtgtacaaaatcgtttatcaagtaataaagtgataaatagagtatcgtatccac 3591695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 42826601 - 42826670
Alignment:
Q  136 ataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaa 205  Q
    |||||||||| |||||||| ||| |||||||||  ||||||   |||||||||| |||||||||||||||    
T  42826601 ataaattttatgtagaaaatgttactttttaaatcttcaatgtcttgaatgcataattttcaagacaaaa 42826670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 16359865 - 16359927
Alignment:
Q  245 gattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||| |||||||||| ||||| ||||||||  ||||||||| |||||||||||| ||||||||    
T  16359865 gattaggcaagtgtaccaaatcgtttaccaagtaataaaatg-taagtatagtattgtatccac 16359927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 51960063 - 51960000
Alignment:
Q  95 ctttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtt 158  Q
    ||||||| | ||| |||||||||||||||| ||||| |||  ||||||| ||||||||||||||    
T  51960063 ctttaggacacttattaaggatacaaaaataaaaataattagtaaatttgaagtagaaaaagtt 51960000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 2507085 - 2507007
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaa 205  Q
    |||| ||||||||||||||  || ||||| || ||||||||| ||||||   ||| ||||||||||| |||||||||||    
T  2507085 aaataattgataaattttatatataaaaaattactttttaaaatttcaacgtattaaatgcatcattctcaagacaaaa 2507007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 3126305 - 3126236
Alignment:
Q  106 ttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaat 176  Q
    |||||||||||| ||||||| |||| ||||||||||||||| || |||  ||| ||||| |||||||||||    
T  3126305 ttgttaaggata-aaaaatggaaataattgataaattttaaataaaaatggttacttttcaaagtttcaat 3126236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 15647309 - 15647259
Alignment:
Q  108 gttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtt 158  Q
    |||| |||| |||||||| |||| ||| |||||||||||||||||||||||    
T  15647309 gttagggatgcaaaaatggaaataatttataaattttaagtagaaaaagtt 15647259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 25405729 - 25405667
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    |||||||||| || || ||||||||  |||||| ||||||||| |||||||||||||| ||||    
T  25405729 gcaagtgtaccaagtcgtttaccaagtaataaagtgataagtaaagtatcgtatccacaagga 25405667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 24306404 - 24306347
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||||| || || ||||||||  |||||| ||||||||| ||||||||||||||    
T  24306404 gcaagtgtaccaagtcgtttaccaagtaataaagtgataagtagagtatcgtatccac 24306347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 32161636 - 32161583
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtt 158  Q
    |||||||| ||| |||||||  |||| |||||||||||||| ||||||||||||    
T  32161636 cttgttaatgattcaaaaatagaaataattgataaattttatgtagaaaaagtt 32161583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 44698120 - 44698075
Alignment:
Q  132 attgataaattttaagtagaaaaagtttctttttaaagtttcaata 177  Q
    |||||||||||||| || ||||||||| |||||||| |||||||||    
T  44698120 attgataaattttatgttgaaaaagttactttttaatgtttcaata 44698075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 17610354 - 17610298
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||| ||||| ||||||||  |||||| | ||||||| ||||||||||||||    
T  17610354 caagtgtaccaaatcgtttaccaagtaataaagttataagtagagtatcgtatccac 17610298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 24267889 - 24267825
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatcca 307  Q
    |||||||  ||||||||  ||||| |||| |||  ||||||||||||||||||||||| ||||||    
T  24267889 cggattagacaagtgtatcaaatcatttatcaagtaataaaatgataagtatagtatcatatcca 24267825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 3167124 - 3167277
Alignment:
Q  73 ttagggtttttctaaaaagtgtctttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagttt 172  Q
    ||||||||||  ||| ||||||||||||| | |||||||||||||||||||||||||| |||| |||||||||||||||||| |||  |||| |||||||    
T  3167124 ttagggttttgttaacaagtgtctttaggacacttgttaaggatacaaaaatgaaaataattggtaaattttaagtagaaaaggttatttttcaaagttt 3167223  T
Q  173 caatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaa 226  Q
      || ||| ||||||| ||||||||| | ||||||| || ||||||||||||||    
T  3167224 tcatgcatcgaatgcaccattttcaaaataaaatttcttttttaaacttcttaa 3167277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 8839671 - 8839797
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    |||||||||||| ||||||||||||| |||| ||||||||||||||||||   || |||||||||||||||| |||||||||||| ||||||||||||||    
T  8839671 cttgttaaggatccaaaaatgaaaataattggtaaattttaagtagaaaag--ttatttttaaagtttcaatgcattgaatgcattattttcaagacaaa 8839768  T
Q  205 atttatt-ctttaaacttcttaataagtg 232  Q
    |||| ||  |||| ||||||||| |||||    
T  8839769 atttcttattttagacttcttaacaagtg 8839797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 41899203 - 41899075
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttc 196  Q
    ||||||| ||| ||||| |||||  |||  |||| |||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||| |    
T  41899203 ttagggcactttttaagaatacacgaatagaaataattgatgaattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttcc 41899104  T
Q  197 aagacaaaatttattctttaaacttctta 225  Q
    ||||||| |||| |||||||  |||||||    
T  41899103 aagacaatatttcttctttagtcttctta 41899075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 6167927 - 6167807
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    ||||||||| ||||| |||| ||||| |||||| ||||||||||| |||||||| | ||||||||||||||| |||||||||||  |||||||  |||      
T  6167927 cttgttaagaatacacaaataaaaataattgatgaattttaagtaaaaaaagttacattttaaagtttcaatgcattgaatgcacaattttcagtacatc 6167828  T
Q  205 atttattctttaaacttctta 225  Q
    |||| |||||||| |||||||    
T  6167827 atttcttctttaatcttctta 6167807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 5168633 - 5168526
Alignment:
Q  109 ttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattt 208  Q
    ||||| ||||| ||||  |||| |||||| ||||||||||||||||| ||   ||||||| ||||||||||||||||||| ||||| ||||| || ||||    
T  5168633 ttaagaatacataaatagaaataattgatgaattttaagtagaaaaaattatattttaaaatttcaatacattgaatgcaccatttccaagataacattt 5168534  T
Q  209 attcttta 216  Q
     |||||||    
T  5168533 cttcttta 5168526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 38868937 - 38868830
Alignment:
Q  126 aaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttctta 225  Q
    ||||| ||| |||| ||||| |||||||||||| ||||||||| |||||||   ||||||||||||||  |||||||||||||  |||||| | ||||||    
T  38868937 aaaataatttataagttttatgtagaaaaagttactttttaaactttcaatgtgttgaatgcatcattcccaagacaaaatttcctctttagatttctta 38868838  T
Q  226 ataagtgc 233  Q
    | ||||||    
T  38868837 acaagtgc 38868830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 39144230 - 39144357
Alignment:
Q  98 tagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttca 197  Q
    |||||| ||| |||| ||| ||||||| ||||| |||||||||||||| | |  |||| |  ||||||||||||||||| || | ||| ||||||||| |    
T  39144230 tagggcacttattaaagattcaaaaataaaaataattgataaattttatgaaataaaaatcactttttaaagtttcaatgcactaaatacatcattttta 39144329  T
Q  198 agacaaaatttattctttaaacttctta 225  Q
    ||||||| ||| ||||||| ||||||||    
T  39144330 agacaaagtttcttctttagacttctta 39144357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 26683635 - 26683732
Alignment:
Q  108 gttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaa 205  Q
    |||||||||  ||||||| |||| ||| |||||||||| ||||||||  || ||||||||| |||||||   |||||||||| |||||||||||||||    
T  26683635 gttaaggatttaaaaatggaaataatttataaattttatgtagaaaatattactttttaaattttcaatgtcttgaatgcattattttcaagacaaaa 26683732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 14193856 - 14193963
Alignment:
Q  119 aaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaa 218  Q
    |||||| ||||| ||| |||||||||| |||||||| ||| ||||||||| |||||||   ||||||||||||||| | ||| |||| ||  | ||||||    
T  14193856 aaaaataaaaataatttataaattttatgtagaaaatgttactttttaaactttcaatgtcttgaatgcatcatttccgagataaaacttcctttttaaa 14193955  T
Q  219 cttcttaa 226  Q
    ||||||||    
T  14193956 cttcttaa 14193963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 24858741 - 24858618
Alignment:
Q  109 ttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagttt-ctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatt 207  Q
    |||||||| ||| ||| ||||| |||||||| |||||  || |||||  || ||||||||| ||||||| ||||||||||||||||| ||||||||| ||    
T  24858741 ttaaggattcaagaataaaaataattgataagttttatctaaaaaaaaattactttttaaaatttcaatgcattgaatgcatcatttccaagacaaagtt 24858642  T
Q  208 tattctttaaacttcttaataagt 231  Q
    | | | ||| ||||||||| ||||    
T  24858641 tctacgttagacttcttaacaagt 24858618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 3784166 - 3784077
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattt 194  Q
    ||||||||| ||||  |||| | ||| |||||| ||||||||||||||||| |||  ||||||||||| ||| ||||||||| |||||||    
T  3784166 cttgttaagaatacgtaaataacaataattgatgaattttaagtagaaaaaatttgattttaaagttttaatgcattgaatgtatcattt 3784077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 19562285 - 19562220
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||||||||||||| ||||| ||||||||  |||||| ||||||||| |||||||| |||||    
T  19562285 cggattaagcaagtgtaccaaatcatttaccaagtaataaagtgataagtaaagtatcgtgtccac 19562220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 26184625 - 26184674
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaat 176  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  26184625 aaattatttataaattttaagtataaaaagtttctttttgaagtttcaat 26184674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 12578372 - 12578308
Alignment:
Q  244 ggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||| |||||||||| ||||| ||||||||| |||||| |||||| || ||||||||||||||    
T  12578372 ggattaggcaagtgtaccaaatcatttaccaaataataaagtgataattagagtatcgtatccac 12578308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 48051790 - 48051730
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttcttttt 165  Q
    |||||||||||| |||||||  |||| |||||||||||||| |||||||||||| ||||||    
T  48051790 cttgttaaggattcaaaaatagaaataattgataaattttatgtagaaaaagttacttttt 48051730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 13908853 - 13908916
Alignment:
Q  250 agcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    ||||||||||| ||||| ||||||||  |||||| ||||||||| |||||||||||||| ||||    
T  13908853 agcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacaagga 13908916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 14648889 - 14648952
Alignment:
Q  245 gattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||| |||||||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  14648889 gattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 14648952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 24971068 - 24970950
Alignment:
Q  108 gttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatt 207  Q
    ||||||||| |||||||  || | ||| | |||||| | | |||||| ||| ||||||||| |||||||    | ||| |||||||||||||||||||||    
T  24971068 gttaaggattcaaaaatagaagtaatttacaaatttcatgcagaaaaggttactttttaaactttcaatgtgcttaatacatcattttcaagacaaaatt 24970969  T
Q  208 tattctttaaacttcttaa 226  Q
    |  ||||||||||||||||    
T  24970968 tcctctttaaacttcttaa 24970950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 12839886 - 12839817
Alignment:
Q  244 ggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    |||||| | ||||||||||||||  |||||||  |||||||||||| ||| |||||||||||||| ||||    
T  12839886 ggattaggaaagtgtacaaaatcgcttaccaattaataaaatgataggtagagtatcgtatccacaagga 12839817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 13128978 - 13128917
Alignment:
Q  246 attaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatcca 307  Q
    |||| |||||||||| ||||| ||||||||  |||||||||||||||| ||||| |||||||    
T  13128978 attaggcaagtgtaccaaatcgtttaccaagtaataaaatgataagtagagtattgtatcca 13128917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 21323982 - 21323917
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||| ||||| ||||||||| |||||  |||| |||| ||||||||||||||    
T  21323982 cggattaggcaagtgtactaaatcgtttaccaaataataatgtgatcagtagagtatcgtatccac 21323917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 36832842 - 36832905
Alignment:
Q  136 ataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaaga 200  Q
    |||||||||| ||||||||||||  ||||||| ||||||||  ||||||||||||||||| ||||    
T  36832842 ataaattttatgtagaaaaagttcatttttaa-gtttcaatgtattgaatgcatcatttttaaga 36832905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 4197190 - 4197265
Alignment:
Q  100 gggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaa 175  Q
    |||| |||||||||||| |||||  | |||| ||| |||||||||| ||||||||||||  ||||| |||||||||    
T  4197190 gggcacttgttaaggattcaaaagaggaaatgatttataaattttatgtagaaaaagttatttttttaagtttcaa 4197265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 36414758 - 36414833
Alignment:
Q  151 aaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaa 226  Q
    ||||| ||| ||||| |||||| |||| ||||||| ||  |||||||||| ||| ||| |||||||||||||||||    
T  36414758 aaaaaattttttttttaagttttaatatattgaatccactattttcaagataaatttttttctttaaacttcttaa 36414833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 42563388 - 42563467
Alignment:
Q  148 tagaaaaagtt-tctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaa 226  Q
    ||||||||||| | |||||||||||||||| ||||||||||| |||||  |||| ||||||| ||| |||  ||||||||    
T  42563388 tagaaaaagttatttttttaaagtttcaatgcattgaatgcaccatttctaagataaaatttcttccttagtcttcttaa 42563467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 53333557 - 53333632
Alignment:
Q  119 aaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattt 194  Q
    |||||| ||||| ||| |||||||| | |||||||||||| ||||||||| ||| ||||  |||||||||| ||||    
T  53333557 aaaaataaaaataatttataaatttcatgtagaaaaagttactttttaaacttttaatatcttgaatgcattattt 53333632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 19882632 - 19882694
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatc 305  Q
    ||||||| |||||||||||||||| |||| |||  |||||| |||| |||| |||||||||||    
T  19882632 cggattaggcaagtgtacaaaatcgtttatcaagtaataaagtgattagtagagtatcgtatc 19882694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 17709756 - 17709813
Alignment:
Q  250 agcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatcca 307  Q
    ||||||||||| ||||| ||||||||  |||||| ||||||||| ||||| |||||||    
T  17709756 agcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtattgtatcca 17709813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 24943567 - 24943668
Alignment:
Q  125 gaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattta-ttctttaaacttct 223  Q
    |||||| |||| |||| |||| ||||||||||||  |||||||  |||||||| ||| ||| ||  |||||||||| |||||||| | |||||| |||||    
T  24943567 gaaaataattgttaaactttatgtagaaaaagttgttttttaatctttcaataaattaaatacacaattttcaagataaaatttactactttaagcttct 24943666  T
Q  224 ta 225  Q
    ||    
T  24943667 ta 24943668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 37660157 - 37660043
Alignment:
Q  118 caaaaatgaaaattattgataaattttaagtag-aaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattcttta 216  Q
    ||||||||||||| ||| ||| |||||| |||| ||||| || ||||||||| |||||  || || |||| || |||| ||| ||| |||||  ||||||    
T  37660157 caaaaatgaaaataatttatagattttatgtagaaaaaaattactttttaaattttca--acgtttaatgtataatttccaaaacataatttcctcttta 37660060  T
Q  217 aacttcttaataagtgc 233  Q
    |||||||||| ||||||    
T  37660059 aacttcttaacaagtgc 37660043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 11700667 - 11700611
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||| ||||  ||||||||  ||||||||||||| || ||||||||||||||    
T  11700667 caagtgtaccaaattgtttaccaagtaataaaatgataaatagagtatcgtatccac 11700611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 17951403 - 17951339
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatcca 307  Q
    |||||||  ||||||||| ||||| ||||||||  | |||| ||||||||| |||||||||||||    
T  17951403 cggattagacaagtgtaccaaatcgtttaccaagtactaaagtgataagtaaagtatcgtatcca 17951339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 17955255 - 17955191
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatcca 307  Q
    |||||||  ||||||||| ||||| ||||||||  | |||| ||||||||| |||||||||||||    
T  17955255 cggattagacaagtgtaccaaatcgtttaccaagtactaaagtgataagtaaagtatcgtatcca 17955191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 19492798 - 19492742
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||| ||||| ||||||||  ||||||  |||||||| ||||||||||||||    
T  19492798 caagtgtaccaaatcgtttaccaagtaataaagggataagtagagtatcgtatccac 19492742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 22526369 - 22526421
Alignment:
Q  256 tgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||| ||||| |||| |||| |||||| ||||||||| ||||||||||||||    
T  22526369 tgtaccaaatcgtttatcaaataataaagtgataagtagagtatcgtatccac 22526421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 20261 - 20145
Alignment:
Q  116 tacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattcttt 215  Q
    |||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||||| |||||||| ||||||| ||||||||||||| |||| |    
T  20261 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttattttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 20162  T
Q  216 aaacttcttaataagtg 232  Q
    |  ||||||||||||||    
T  20161 agtcttcttaataagtg 20145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 34496876 - 34496999
Alignment:
Q  103 cgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagaca 202  Q
    ||||||||||| ||||||||||| |||| |||| ||||||||||||| ||||  || |||| |||||||||||| |||||||| ||| |||| |||||||    
T  34496876 cgcttgttaagaatacaaaaatggaaataattggtaaattttaagtataaaatattactttataaagtttcaatgcattgaatacataatttacaagaca 34496975  T
Q  203 aaatttattctttaaacttcttaa 226  Q
    |||||| |||||||||||||||||    
T  34496976 aaatttcttctttaaacttcttaa 34496999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 42631776 - 42631687
Alignment:
Q  137 taaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaa 226  Q
    ||||||||||||||||||| || | ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  42631776 taaattttaagtagaaaaaattaccttttaaagttttaatgcattgaatgcaccattttcaagacaaaatttattctttagacttcttaa 42631687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 42350499 - 42350374
Alignment:
Q  108 gttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatt 207  Q
    |||||||||  ||||||| |||| ||| |||||||||| ||||||||| || ||||||||| |||||||   |||||||||||||||||||||||||| |    
T  42350499 gttaaggatttaaaaatggaaataatttataaattttatgtagaaaaatttactttttaaattttcaatgtcttgaatgcatcattttcaagacaaaact 42350400  T
Q  208 tattctttaaacttcttaataagtgc 233  Q
    | |  ||||||||||||||| |||||    
T  42350399 tttcatttaaacttcttaatcagtgc 42350374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 44814167 - 44814057
Alignment:
Q  114 gatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattct 213  Q
    |||||||||||  |||| ||||||||||||||||||||||  ||| | |||||||||||||||   ||||||||| ||||||||||||||||||| ||||    
T  44814167 gatacaaaaatagaaataattgataaattttaagtagaaagggttgcattttaaagtttcaat--gttgaatgcaccattttcaagacaaaatttcttct 44814070  T
Q  214 ttaaacttcttaa 226  Q
    |||  ||||||||    
T  44814069 ttagtcttcttaa 44814057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 28827691 - 28827600
Alignment:
Q  105 cttgttaaggatacaaaaatg-aaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcatttt 195  Q
    ||||||||||||||||||||| ||||  |||  |||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||| |||||    
T  28827691 cttgttaaggatacaaaaatggaaaaaaattagtaaattttaaatagaaaaagttgcttttcaaaatttcaatgcattgaatgcattatttt 28827600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 14955209 - 14955343
Alignment:
Q  99 agggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaa 198  Q
    ||||| |||||||||||| |||||||  |||| | | | || |||||   |||||||||| ||||||||| |||||||   ||||||||||||||| |||    
T  14955209 agggcacttgttaaggattcaaaaatagaaataacttagaagttttataaagaaaaagttactttttaaactttcaatgtgttgaatgcatcatttccaa 14955308  T
Q  199 gacaaaatttattctttaaacttcttaataagtgc 233  Q
    || |||| ||  |||||||| ||||||| ||||||    
T  14955309 gataaaacttcctctttaaaattcttaacaagtgc 14955343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 24110762 - 24110697
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||  ||||| ||||||||  |||||||||||||||| ||||||||||||||    
T  24110762 cggattatgcaagtgtatcaaatcatttaccaagtaataaaatgataagtagagtatcgtatccac 24110697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 29382467 - 29382403
Alignment:
Q  244 ggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||| |||||||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  29382467 ggattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 29382403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 24114389 - 24114326
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatcc 306  Q
    ||||||| |||||||||| ||||  ||||||||  |||||||||||||||| ||||||||||||    
T  24114389 cggattaggcaagtgtaccaaattgtttaccaagtaataaaatgataagtagagtatcgtatcc 24114326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 13315089 - 13315034
Alignment:
Q  253 aagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||| | ||| ||||||||  |||||| ||||||||||||||||||||||||    
T  13315089 aagtgtaccagatcatttaccaagtaataaagtgataagtatagtatcgtatccac 13315034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 8871236 - 8871174
Alignment:
Q  167 aagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaataa 229  Q
    ||||||||||   ||||||| |||| ||||||||||||| | |||||||| ||||||||||||    
T  8871236 aagtttcaatgtgttgaatgtatcaatttcaagacaaaaatcattctttagacttcttaataa 8871174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 44063177 - 44063091
Alignment:
Q  119 aaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaa 205  Q
    |||||| ||||| ||| ||||||||||  | ||||| |||  |||||||| ||||||||  ||||||||||| ||||||| ||||||    
T  44063177 aaaaattaaaataatttataaattttatattgaaaatgttattttttaaattttcaatatcttgaatgcatcgttttcaaaacaaaa 44063091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 5850933 - 5850998
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||  |||||||||  |||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  5850933 cggattagtcaagtgtacctaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 5850998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 14528141 - 14528206
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||| | ||||| ||||||||  |||||| ||||| ||| ||||||||||||||    
T  14528141 cggattaggcaagtgtgccaaatcgtttaccaagtaataaagtgatacgtagagtatcgtatccac 14528206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 17976611 - 17976676
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||| | ||||| |||| |||  |||||| ||||||||| ||||||||||||||    
T  17976611 cggattaggcaagtgtgccaaatcatttatcaagtaataaagtgataagtagagtatcgtatccac 17976676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 30235370 - 30235419
Alignment:
Q  244 ggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagta 293  Q
    |||||| |||||||||||||||| ||||||||  |||||| |||||||||    
T  30235370 ggattaggcaagtgtacaaaatcgtttaccaagtaataaagtgataagta 30235419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 30783835 - 30783783
Alignment:
Q  256 tgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  30783835 tgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 30783783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 38967872 - 38967820
Alignment:
Q  180 ttgaatgcatcattttcaagacaaaatttattctttaaacttcttaataagtg 232  Q
    |||||||||| |||| | ||| ||||||| ||||||||||||||||| |||||    
T  38967872 ttgaatgcattatttccgagataaaatttcttctttaaacttcttaacaagtg 38967820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 39082577 - 39082529
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaatttta 145  Q
    ||||||| |||||||| ||| |||||| |||||| ||||||||||||||    
T  39082577 ttagggcacttgttaaagattcaaaaaggaaaataattgataaatttta 39082529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 79941 - 80068
Alignment:
Q  89 aagtgtctttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgca 188  Q
    |||||||||||||||  |||||||| ||||| |||| |||||||||||| ||||||| ||||||||||||   |||||||||||||||||||||| ||||    
T  79941 aagtgtctttagggcaattgttaagaatacataaataaaaattattgatgaattttatgtagaaaaagttatattttaaagtttcaatacattgagtgca 80040  T
Q  189 tcattttcaagacaaaatttattcttta 216  Q
     ||||| ||| |||| |||| |||||||    
T  80041 ccatttccaatacaacatttcttcttta 80068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 30456788 - 30456871
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgca 188  Q
    ||||||||||||||||||||| |||| ||||||||||||| |||| |||||||| ||||||||| |||||||| ||||||||||    
T  30456788 cttgttaaggatacaaaaatggaaataattgataaatttttagtataaaaagttactttttaaaatttcaatatattgaatgca 30456871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 8082454 - 8082578
Alignment:
Q  107 tgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaat 206  Q
    ||||||||||  ||||||  |||| |||  ||||||||| | ||||||| || ||||||||||||||||| |||| |||||| |||||||||||||||||    
T  8082454 tgttaaggatttaaaaatagaaataattagtaaattttatg-agaaaaaattactttttaaagtttcaatgcatttaatgcaccattttcaagacaaaat 8082552  T
Q  207 ttattctttaaacttcttaataagtg 232  Q
    || || |||| ||||||||| |||||    
T  8082553 ttcttatttagacttcttaagaagtg 8082578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 29481915 - 29481981
Alignment:
Q  160 ctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaa 226  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||| |||||||    
T  29481915 ctttttaaagtttcaatacattgaatgcatcatttttaagataaatttttttctttaaatttcttaa 29481981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 9726014 - 9726079
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  9726014 cggattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 9726079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 12183438 - 12183373
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  12183438 cggattatgcaagtgtaccaaatcgtttaccaagtaataaagtgataagtacagtatcgtatccac 12183373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 23578891 - 23578756
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttc 196  Q
    ||||||| |||||||| |||  ||||||  |||| | | |||||||||| ||  |||||||| || |||||| ||| ||| ||||||   || |||||||    
T  23578891 ttagggcacttgttaaagatttaaaaatagaaataaataataaattttatgtttaaaaagttactatttaaaattttaatgcattgacaacaccattttc 23578792  T
Q  197 aagacaaaatttattctttaaacttcttaataagtg 232  Q
    || | ||||||| ||||||||||||||||| |||||    
T  23578791 aaaataaaatttcttctttaaacttcttaacaagtg 23578756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 21907424 - 21907494
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccacgagga 313  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||| ||||||||| |||||||||||||| ||||    
T  21907424 cggattaggcaagtataccaaatcgtttaccaagtaataaagtgataagtaaagtatcgtatccacaagga 21907494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 17729144 - 17729209
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| | |||||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  17729144 cggattaggtaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 17729209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 21672542 - 21672477
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| ||||||| || ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  21672542 cggattaggcaagtgcaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 21672477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 31535780 - 31535655
Alignment:
Q  111 aaggatacaaaaatgaaaattattgataaattttaagtagaaaaag----tttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaat 206  Q
    |||||| ||||||| ||||| ||| |||||||||| ||| |||||     || ||||||||| |||||||   || |||||||||||| ||||| ||||     
T  31535780 aaggattcaaaaataaaaatgatttataaattttatgtaaaaaaaaaaatttactttttaaactttcaatgtgttaaatgcatcatttccaagataaaaa 31535681  T
Q  207 ttattctttaaacttcttaataagtg 232  Q
     | |||||||||||| ||||||||||    
T  31535680 attttctttaaactttttaataagtg 31535655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 3686855 - 3686792
Alignment:
Q  161 tttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttctt 224  Q
    |||||||| ||||||||  ||||||||||||||| |||||||||| ||  | ||||||||||||    
T  3686855 tttttaaactttcaatatcttgaatgcatcatttccaagacaaaacttcatttttaaacttctt 3686792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 33605183 - 33605056
Alignment:
Q  106 ttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaa 205  Q
    |||||||| |||||||||| | ||| |||||||||||| |||| |||||||||   ||||||||||| |||   || |||| |  | ||| |||||||||    
T  33605183 ttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaatgatttcaatgtacaaattttaagacaaaa 33605084  T
Q  206 tttattctttaaacttcttaataagtgc 233  Q
     || |||||||  |||||||| ||||||    
T  33605083 attcttctttagtcttcttaacaagtgc 33605056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 6067493 - 6067567
Alignment:
Q  93 gtctttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaa 167  Q
    ||||| ||||| |||||||| ||   ||||| |||||| |||| ||||||| | |||||||||||||||||||||    
T  6067493 gtcttaagggcacttgttaaagacttaaaaaagaaaataattgttaaatttcatgtagaaaaagtttctttttaa 6067567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 8241269 - 8241334
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||| ||||| ||||| ||  || ||| ||||||||| ||||||||||||||    
T  8241269 cggattaggcaagtgtaccaaatcgtttacgaagtaagaaagtgataagtagagtatcgtatccac 8241334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 21679958 - 21679893
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| ||||||| || ||||| ||||| ||  |||||| ||||||||| ||||||||||||||    
T  21679958 cggattaggcaagtgcaccaaatcgtttactaagtaataaagtgataagtagagtatcgtatccac 21679893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 25927410 - 25927345
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||| ||| | ||||||||  |||||| ||||||||| | ||||||||||||    
T  25927410 cggattaggcaagtgtaccaaaacgtttaccaagtaataaagtgataagtagaatatcgtatccac 25927345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 31597531 - 31597620
Alignment:
Q  119 aaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaattt 208  Q
    |||||| ||||  ||| |||| ||||| |||||||||||| |||||||| |||| |||   |||||||||  | ||||||||||||||||    
T  31597531 aaaaataaaaacaatttataacttttatgtagaaaaagttactttttaatgttttaatgtgttgaatgcacaaatttcaagacaaaattt 31597620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 9516786 - 9516842
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||| ||||| |||||| |  |||||| ||||||||| ||||||||||||||    
T  9516786 caagtgtaccaaatcgtttacctagtaataaagtgataagtagagtatcgtatccac 9516842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 22410409 - 22410369
Alignment:
Q  268 tttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||  |||||||||||||||| ||||||||||||||    
T  22410409 tttaccaagtaataaaatgataagtagagtatcgtatccac 22410369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 23844562 - 23844510
Alignment:
Q  253 aagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatc 305  Q
    |||||||| ||||| ||||||||  |||||||||||||||| |||||| ||||    
T  23844562 aagtgtaccaaatcgtttaccaagtaataaaatgataagtagagtatcatatc 23844510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 207
Target Start/End: Complemental strand, 1355482 - 1355380
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaa 204  Q
    |||||||||||||||||||| ||||| ||||||||||||||| ||||| || || | ||| ||||||||||| || | |||||| |||||||||||||||    
T  1355482 cttgttaaggatacaaaaataaaaataattgataaattttaaatagaagaaattacatttaaaagtttcaatgcagtaaatgcaccattttcaagacaaa 1355383  T
Q  205 att 207  Q
    |||    
T  1355382 att 1355380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 1863228 - 1863092
Alignment:
Q  97 ttagggcgcttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttc 196  Q
    ||||||| || ||||||||| |||| ||  |||| ||| | || ||||| ||||| |||||| ||||||||| |||||||   |||||| |||||||| |    
T  1863228 ttagggcactagttaaggattcaaatatagaaataatttacaagttttatgtagataaagttactttttaaactttcaatgtgttgaatacatcatttcc 1863129  T
Q  197 aagacaaaatttattctttaaacttcttaataagtgc 233  Q
    |||| |||||||||| |||||||||||||| ||||||    
T  1863128 aagataaaatttattttttaaacttcttaacaagtgc 1863092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 15965914 - 15965795
Alignment:
Q  106 ttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaa 205  Q
    |||||||| ||||| ||||  |||| |||||| |||||||||||||||||||| | ||||||| ||| ||| ||||||||||| |||||  ||||||| |    
T  15965914 ttgttaagaatacacaaatagaaataattgatgaattttaagtagaaaaagttacattttaaaatttaaatgcattgaatgcaccatttctaagacaaca 15965815  T
Q  206 tttattctttaaacttctta 225  Q
    ||| |||||||  |||||||    
T  15965814 tttcttctttagtcttctta 15965795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 19367056 - 19366976
Alignment:
Q  140 attttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaactt 221  Q
    ||||||||||||||| ||| |||||||||||||||||  |||||||||   |||||||||||||||||| ||||||||||||    
T  19367056 attttaagtagaaaa-gttactttttaaagtttcaatttattgaatgctcaattttcaagacaaaatttcttctttaaactt 19366976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 38370620 - 38370531
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattcttta 216  Q
    |||| |||||||||||||| ||||||||| || ||||| |||  || ||| |||| |||||||||||||||||||||||||| |||||||    
T  38370620 aaataattgataaattttacgtagaaaaatttacttttaaaaacttaaatgcattcaatgcatcattttcaagacaaaatttcttcttta 38370531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 9515617 - 9515533
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattc 212  Q
    |||| |||||||||||||| ||| ||||| |  ||||||||||||||||| |||||||||||| |||| ||||||||| |||||||    
T  9515617 aaataattgataaattttatgtaaaaaaaata-ctttttaaagtttcaatgcattgaatgcataatttccaagacaaagtttattc 9515533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 36302693 - 36302600
Alignment:
Q  144 taagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcatttt-----caagacaaaatttattctttaaacttcttaataagtg 232  Q
    ||||||| |||| ||  |||||||||||||||| |||||||||||  |||||     ||||||||||||||||||||||||||||||| |||||    
T  36302693 taagtaggaaaaattattttttaaagtttcaatgcattgaatgcactattttaatttcaagacaaaatttattctttaaacttcttaacaagtg 36302600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 36302255 - 36302140
Alignment:
Q  109 ttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaagt--ttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaat 206  Q
    |||||||| |||||| |||||| |||| |||||||||| ||||||||||  || ||||| || ||||||| |||||||||||| |||| | ||||||| |    
T  36302255 ttaaggatgcaaaaaggaaaataattggtaaattttaaatagaaaaagttatttttttttaaatttcaatgcattgaatgcattatttccgagacaaatt 36302156  T
Q  207 ttattctttaaacttc 222  Q
    ||  | ||||||||||    
T  36302155 tttgtttttaaacttc 36302140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 4462655 - 4462556
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaa 226  Q
    |||| ||| |||| ||||| |||||||| ||| ||||||||| ||||||||  ||||||||||||||| |||||||||| ||  | || |||||||||||    
T  4462655 aaataatttataagttttatgtagaaaatgttactttttaaactttcaatatcttgaatgcatcatttccaagacaaaacttccttttaaaacttcttaa 4462556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 6539895 - 6539796
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaa 226  Q
    |||| ||| |||| ||||| |||||||| ||| ||||||||| |||||||   ||||||||||||||||||| |||||| ||  | ||||||||||||||    
T  6539895 aaataatttataagttttatgtagaaaatgttactttttaaactttcaatgtcttgaatgcatcattttcaaaacaaaacttcatttttaaacttcttaa 6539796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 1352436 - 1352367
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaatacattgaatgcatcattttc 196  Q
    |||| |||||||||||||||||| |||||||| | ||||||||||||||| ||  ||||||| |||||||    
T  1352436 aaataattgataaattttaagtaaaaaaagttacattttaaagtttcaatgcagcgaatgcaccattttc 1352367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 15375981 - 15375924
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||||| ||||| ||||||||| |||||||||||||||| |||||| |||||||    
T  15375981 gcaagtgtaccaaatcgtttaccaaataataaaatgataagtagagtatcctatccac 15375924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 24852278 - 24852214
Alignment:
Q  244 ggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||| |||||| ||| |||||  |||||||  |||||||||||||||||||||||||||||||    
T  24852278 ggattaggcaagtctactaaatcgattaccaagtaataaaatgataagtatagtatcgtatccac 24852214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 17185464 - 17185517
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatc 305  Q
    ||||||||| ||||| ||||||||| |||||| ||||||||| |||||||||||    
T  17185464 caagtgtactaaatcatttaccaaataataaagtgataagtagagtatcgtatc 17185517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 21044562 - 21044490
Alignment:
Q  160 ctttttaaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaacttcttaataagtg 232  Q
    ||||||||| |||| || ||||||| ||| | ||||||||  ||||||| ||||||||||||||||| |||||    
T  21044562 ctttttaaactttcgatgcattgaaagcaccgttttcaagttaaaatttcttctttaaacttcttaacaagtg 21044490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 26449264 - 26449304
Alignment:
Q  136 ataaattttaagtagaaaaagtttctttttaaagtttcaat 176  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  26449264 ataaattttatgtagaaaaaatttctttttaaagtttcaat 26449304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 27695129 - 27695179
Alignment:
Q  105 cttgttaaggatacaaaaatgaaaattattgataaattttaagtagaaaaa 155  Q
    |||||||||||| ||||||||||||| ||| |||||||||| ||| |||||    
T  27695129 cttgttaaggattcaaaaatgaaaataattaataaattttatgtaaaaaaa 27695179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 15469928 - 15469993
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||| ||||| ||||||||  |||||| ||||| ||  ||||||||||||||    
T  15469928 cggattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataggtcgagtatcgtatccac 15469993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 17171660 - 17171595
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| | |||||||| |||||||||| |||  |||||| ||||||||| || |||||||||||    
T  17171660 cggattaggtaagtgtaccaaatcttttatcaagtaataaagtgataagtagagcatcgtatccac 17171595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 19004325 - 19004268
Alignment:
Q  251 gcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    |||||||||| ||||| ||||||||  |||||| ||||||||  ||||||||||||||    
T  19004325 gcaagtgtactaaatcgtttaccaagtaataaagtgataagtggagtatcgtatccac 19004268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 19608870 - 19608821
Alignment:
Q  127 aaattattgataaattttaagtagaaaaagtttctttttaaagtttcaat 176  Q
    |||| |||||||| ||||| |||||||||||| |||||||| ||||||||    
T  19608870 aaataattgataatttttatgtagaaaaagttactttttaatgtttcaat 19608821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 168403 - 168340
Alignment:
Q  245 gattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||| |||||||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||    
T  168403 gattaggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccac 168340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 39576 - 39641
Alignment:
Q  243 cggattaagcaagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||| |||||||||||||||  ||||||||  |||||| ||||||||| || |||||||||||    
T  39576 cggattaggcaagtgtacaaaattatttaccaagtaataaagtgataagtagagcatcgtatccac 39641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0838 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 2371 - 2427
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||| ||||| ||||||||| ||||||  |||||||| ||||||||||||||    
T  2371 caagtgtaccaaatcgtttaccaaataataaagggataagtagagtatcgtatccac 2427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0832 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 2402 - 2458
Alignment:
Q  252 caagtgtacaaaatcttttaccaaacaataaaatgataagtatagtatcgtatccac 308  Q
    ||||||||| ||||| ||||||||| ||||||  |||||||| ||||||||||||||    
T  2402 caagtgtaccaaatcgtttaccaaataataaagggataagtagagtatcgtatccac 2458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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