View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_47 (Length: 291)
Name: NF18809_low_47
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 72 - 288
Target Start/End: Complemental strand, 11457995 - 11457795
Alignment:
| Q |
72 |
ctctgattctgtccatcttgcatggcttatatatcgaaatatcaaattgataataaacaaaactatatgaatgatttaagacaaaacctttgtaaataat |
171 |
Q |
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| T |
11457995 |
ctctgattctgtccatcttgcatggcttatatatcgaaatatcaaatt----------------atatgaataatttaagacaaaacctttgtaaataat |
11457912 |
T |
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| Q |
172 |
ttctgttttgccgaccaaaaaaccttttaaaataatgctacttgcacgtgaagtgtgaaagattagaaaa-ttattacaaaacacaatctccgaaccaat |
270 |
Q |
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| T |
11457911 |
ttctgttttgccgacca-aaaaccttttaaaataatgctacttgcacgtgaagtgtgaaagattaaaaaatttattactaaacacaatctccgaaccaat |
11457813 |
T |
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| Q |
271 |
aaatgaatgtcatgtcat |
288 |
Q |
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|||||||||||||||||| |
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| T |
11457812 |
aaatgaatgtcatgtcat |
11457795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 11528671 - 11528815
Alignment:
| Q |
145 |
atttaagacaaaacctttgtaaataatttctgttttgccgaccaaaaaaccttttaaaataatgctacttgcacgtgaagtgtg-aaagattagaaaa-t |
242 |
Q |
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| T |
11528671 |
atttaagacaaaacctttgtaaataatttctgttttgccgaccaaaaaaccttttaaaataatgctacttgcacgtgaagtgtgaaaagattagaaaatt |
11528770 |
T |
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| Q |
243 |
tattacaaaacacaatctccgaaccaataaatgaatgtcatgtcat |
288 |
Q |
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| T |
11528771 |
tattacaaaacac-atctccgaaccaataaatgaatgtcatgtcat |
11528815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 11528564 - 11528645
Alignment:
| Q |
72 |
ctctgattctgtccatcttgcatggcttatatatcgaaatatcaaattgataataaacaaaactatatgaatgatttaagac |
153 |
Q |
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| T |
11528564 |
ctctgattctgtccatcttgcatggcttatatatcgaaatattaaattgataataaacaaaactatatgaataatttaagac |
11528645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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