View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_49 (Length: 280)
Name: NF18809_low_49
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 15711090 - 15710825
Alignment:
| Q |
1 |
ataaagattcagtttcaagtttcagatttactaccttcaaatatcattacatgcccctcaccaaaaaatgtaaattaattactattagtagatataatat |
100 |
Q |
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| T |
15711090 |
ataaagattcagtttcaagtttcagatttactaccttcaaatatcattacatgcccctcaccaaaaaatgtaaattaattactattagtagatataatat |
15710991 |
T |
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| Q |
101 |
gcttctaatgaaccaactaaccaaaaatgaaaattttcattttgcaatattttctaacaaaatgttgtaacttaatgtccgaataatcaaatttgtatgc |
200 |
Q |
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| T |
15710990 |
gcttctaatgaaccaactaaccaaaaatgaaaattttcattttgcaatattttctaacaaaatgttgtaacttaatgtccgaataatcaaatttgtatgc |
15710891 |
T |
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| Q |
201 |
agacttggaaactatggggtgaaggtaaaagttgggaattcgttgatccaatccaaagaaaatcat |
266 |
Q |
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| T |
15710890 |
agacttggaaactatggggtgaaggtaaaagttgggaattcgttgatccaatccaaagaaaatcat |
15710825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 15696687 - 15696612
Alignment:
| Q |
191 |
atttgtatgcagacttggaaactatggggtgaaggtaaaagttgggaattcgttgatccaatccaaagaaaatcat |
266 |
Q |
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| T |
15696687 |
atttgtatgcagacttggaagctttggtgtgaaggaaaaagcttggaattaatagatccaatccacaaaaaatcat |
15696612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 15799244 - 15799195
Alignment:
| Q |
191 |
atttgtatgcagacttggaaactatggggtgaaggtaaaagttgggaatt |
240 |
Q |
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| T |
15799244 |
atttgtatgcagacttggaaactctggtgtgaagggaaatgtttggaatt |
15799195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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