View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_53 (Length: 265)
Name: NF18809_low_53
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_53 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 20604437 - 20604684
Alignment:
| Q |
18 |
aaatggattatagtttggcagcgttgaagctattttgctcacaactgaaactcgctcgtgaagttccttcacaacatagcttcactctcggtggcattct |
117 |
Q |
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| T |
20604437 |
aaatggattatagtttggcagcgttgaagctattttgctcacaactgaaactcgctcgtgaagttccttcacaacatagcttcactctcggtggcattct |
20604536 |
T |
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| Q |
118 |
ctttcaacgcgcttggttacaggtttcattccttattccaaaacgccgtcgttttcactttcagtannnnnnnnnnnnnnnnngtaaaatgtcttaaccg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20604537 |
ctttcaacgcgcttggttacaggtttcattccttattccaaaacgccgtcgttttcactttcagtattttctttttcttttttgtaaaatgtcttaaccg |
20604636 |
T |
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| Q |
218 |
tagggcgttctggtgtcctccaacgacggcagcggacctcttcttctc |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20604637 |
tagggcgttctggtgtcctccaacgacggcagcggacctcttcttctc |
20604684 |
T |
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