View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_56 (Length: 251)
Name: NF18809_low_56
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_56 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 23430894 - 23430648
Alignment:
| Q |
8 |
tccaagaatatgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatccta---atacataaagtacattaactagtat |
104 |
Q |
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| T |
23430894 |
tccaagaaaatgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatcctcctcatacataaagtacattaactagtat |
23430795 |
T |
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| Q |
105 |
aactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatctacaacatcttgtccttgatttgcgatatttcca |
204 |
Q |
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| T |
23430794 |
aactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcggcatctacaacatcttgtccttgattcgcgatatttcca |
23430695 |
T |
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| Q |
205 |
acatcttttgcagtttcaccaatcctatctgcaccttcactaacaac |
251 |
Q |
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| T |
23430694 |
acatcttttgcagtttcaccaatcctatctgcaccttcactaacaac |
23430648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 23438901 - 23438789
Alignment:
| Q |
71 |
attatcctaatacataaagtacattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatc |
170 |
Q |
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| T |
23438901 |
attatccttatacataaactacataaaccagtataactgttataatataactggaaggaatgtaaaaagaggtggcatgggaaactttcccagcaacatc |
23438802 |
T |
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| Q |
171 |
tacaacatcttgt |
183 |
Q |
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| T |
23438801 |
tacgacatcttgt |
23438789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 23445637 - 23445571
Alignment:
| Q |
58 |
atcaacaaatcaaattatcctaatacataaagtacattaactagtataactattataatataactgg |
124 |
Q |
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| T |
23445637 |
atcaacaaataaaattattctcatgcataaagtacataaaccattataactgttataatataactgg |
23445571 |
T |
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