View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_57 (Length: 250)
Name: NF18809_low_57
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_57 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 30947981 - 30947732
Alignment:
| Q |
13 |
aatatcagcttataaaggaacaccagttctgcattacacgacgttataattggattgtattatacatgattaataaactaatacatgatatgatga---- |
108 |
Q |
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| T |
30947981 |
aatatcagcttataaaggaacaccagttctgcattacacaaagttataattggattgtattatacatgattaataaactaatacatgatatgatgacgac |
30947882 |
T |
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| Q |
109 |
--------taatgctgatggtgatgatagatagaaacaaccaaaaaatatacgatgatgcaaattacaaaaagcaacatgtatatcataatcatataaat |
200 |
Q |
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| T |
30947881 |
aacgatgataatgctgatggtgatgatagatagaaacagccaaaaaatatacgatgatgcaaattacaaaaagcaacatgtatatcataatcatataaat |
30947782 |
T |
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| Q |
201 |
aatggtcatatcgataaacaactttgtccataattataacaattagcaat |
250 |
Q |
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| T |
30947781 |
aatggtcatatcgataaacaactttgtccatacttataacaattggcaat |
30947732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 6910842 - 6910949
Alignment:
| Q |
104 |
gatgataatgctgatggtgatgatagatagaaacaaccaaaaaatatacgatgatgcaaattacaaaaagcaacatgtatatcataatcatataaataat |
203 |
Q |
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||||||||||| || ||||||||| |||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
6910842 |
gatgataatgccgacggtgatgatcgatagaaacagccaaaaaatacacgatgatgcaaattacaaaaaacaacacatatatcataatcatataaataat |
6910941 |
T |
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| Q |
204 |
ggtcatat |
211 |
Q |
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| T |
6910942 |
ggccatat |
6910949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 6910499 - 6910563
Alignment:
| Q |
13 |
aatatcagcttataaaggaacaccagttctgcattacacgacgttataattggattgtattatac |
77 |
Q |
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|||||||| ||| ||||||||||||||||| ||||||| ||||||||||||| ||| |||||||| |
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| T |
6910499 |
aatatcagtttacaaaggaacaccagttctacattacatgacgttataattgaattatattatac |
6910563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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