View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_58 (Length: 250)
Name: NF18809_low_58
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 41799999 - 41800234
Alignment:
| Q |
1 |
cacttcacaaatcaagaagttagcaaagaagatgagaattcataacactatcaataccacatttactcatatatacgattatggtacatttttcctatcg |
100 |
Q |
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| T |
41799999 |
cacttcacaaatcaagaagttagcaaagaagatgagaattcataacactatcaataccacatttactcatatatacgattatggtacatttttcctatcg |
41800098 |
T |
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| Q |
101 |
ctaaccaataattgccttttgctgttagaaagatataaagtagacacaaccaattctttcataccaatctttaattttgatatgcaaatacaagcttaac |
200 |
Q |
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| T |
41800099 |
ctaaccaataattgcctttttctgttagaaagatataaagtagacacaaccaattctttcataccaatctttaattttgatatgcaaatacaagcttaac |
41800198 |
T |
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| Q |
201 |
ctcaattttattctttatattatattcctatgaata |
236 |
Q |
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| T |
41800199 |
ctcaattttattctttatattatattcctatgaata |
41800234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3380615 - 3380678
Alignment:
| Q |
1 |
cacttcacaaatcaagaagtta----gcaaagaagatgagaattcataacactatcaataccac |
60 |
Q |
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| T |
3380615 |
cacttcacaaatcaagaagttaatcagcaaagaagatgagaatccataacactatcaataccac |
3380678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 10915899 - 10915983
Alignment:
| Q |
103 |
aaccaataattgccttttgctgttagaaagatataaagtagacacaaccaattctttcataccaatctttaattttgatatgcaa |
187 |
Q |
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| T |
10915899 |
aaccaaaaattgtctttttctgttacaaggctagaaattagacacaaccaatttcatcacaccaatcttttattttgatctgcaa |
10915983 |
T |
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