View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_62 (Length: 240)
Name: NF18809_low_62
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_62 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 7907107 - 7907333
Alignment:
| Q |
20 |
cgaaattctgattcctgatcgtacga----gctcttagctcttt-aagtttcatgtatctagtctgatttatgatttgtaaatttgcagtaccttgtgta |
114 |
Q |
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| T |
7907107 |
cgaaattctgattcctgatcgtatgaatgagctcttatctcttttaagtttcatgtatctagtctgatttgtgatttgtaaatttgcagtaccttgtgta |
7907206 |
T |
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| Q |
115 |
acatctaataatcttcagttaaatgtttgcattttgttccacgaaatttgcagtaccttgtttcatcatatgcatttggattactcagttgtgtattctg |
214 |
Q |
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| T |
7907207 |
acatctaataatcttcagtgaaatgtttgcattttgttccacgaaatttgcagtaccttgtttcatcatatgcatttggattactcagttgtgtattctg |
7907306 |
T |
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| Q |
215 |
tgcatgcagta-agtctatgtagctgc |
240 |
Q |
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| T |
7907307 |
tgcatgcagtatagtctatgtagctgc |
7907333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 7896711 - 7896777
Alignment:
| Q |
20 |
cgaaattctgattcctgatcgtacgagctcttagctctttaagtttcatgtatctagtctgatttat |
86 |
Q |
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| T |
7896711 |
cgaaattctgattcctgaacttatgagctcttagctctctaagtttcatgtatctagtctgatttat |
7896777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 7897625 - 7897682
Alignment:
| Q |
182 |
atatgcatttggattactcagttgtgtattctgtgcatgcagtaagtctatgtagctgc |
240 |
Q |
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| T |
7897625 |
atatgcatttggattactcagttgtgtattctgtgcatgcagt-agtctatgtagctgc |
7897682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 7896805 - 7896844
Alignment:
| Q |
113 |
taacatctaataatcttcagttaaatgtttgcattttgttc |
153 |
Q |
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| T |
7896805 |
taacatctaataaacttcagttaaatg-ttgcattttgttc |
7896844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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