View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_64 (Length: 239)
Name: NF18809_low_64
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 5194880 - 5195017
Alignment:
| Q |
82 |
atcgttatgcaaaattaagtacaggaaaaacttgagtaattttgccagaataaaaataacaaagacatcaagcctcaattctatcaataatataacctta |
181 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5194880 |
atcgttatgcaaaattaagttcaggaaaaacgtgagtaattttggcagaataaaaataacaaagacatcaagcctcaattctatcaataatataacctta |
5194979 |
T |
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| Q |
182 |
tcgttgaatgctctgaaatactttgacaccaagtcaaacata |
223 |
Q |
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||||| |||||| |||||||||||||||||||||||||| |
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| T |
5194980 |
tcgtttaatgct----aatactttgacaccaagtcaaacata |
5195017 |
T |
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