View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18809_low_68 (Length: 237)

Name: NF18809_low_68
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18809_low_68
NF18809_low_68
[»] chr2 (6 HSPs)
chr2 (38-134)||(31220492-31220588)
chr2 (166-221)||(31182557-31182612)
chr2 (166-218)||(31201605-31201657)
chr2 (169-221)||(31220260-31220312)
chr2 (141-178)||(31220433-31220470)
chr2 (185-218)||(31236726-31236759)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 31220588 - 31220492
Alignment:
Q  38 agataaccttgtatgcttaacatattctttaaggtaggttggtcactactgtggtggatagatgtgttgttcttaattttcagaaccaaattaaata 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31220588 agataaccttgtatgcttaacatattctttaaggtaggttggtcactactgtggtggatagatgtgttgttcttaattttcagaacctaattaaata 31220492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 31182612 - 31182557
Alignment:
Q  166 acacaagcttataattaattatgatgcagtgttctcaaatcacaaaatctttctgg 221  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31182612 acacaagcttataattaattatgatgcagtgttctcagatcacaaaatctttctgg 31182557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 31201657 - 31201605
Alignment:
Q  166 acacaagcttataattaattatgatgcagtgttctcaaatcacaaaatctttc 218  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  31201657 acacaagcttttaattaattatgatgcagtgttctcagatcacaaaatctttc 31201605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 31220312 - 31220260
Alignment:
Q  169 caagcttataattaattatgatgcagtgttctcaaatcacaaaatctttctgg 221  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  31220312 caagcttataattaattatggtgcagtgttctcaagtcacaaaatctttctgg 31220260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 31220470 - 31220433
Alignment:
Q  141 tttagaacctaattttcgaggtgctacacaagcttata 178  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  31220470 tttagaacctaattttcaaggtgctacaaaagcttata 31220433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 31236759 - 31236726
Alignment:
Q  185 tatgatgcagtgttctcaaatcacaaaatctttc 218  Q
    ||||||||||||||||||| ||||||||||||||    
T  31236759 tatgatgcagtgttctcaagtcacaaaatctttc 31236726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University