View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_72 (Length: 227)
Name: NF18809_low_72
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_72 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 1413149 - 1413369
Alignment:
| Q |
6 |
agaagatatgtttttccatagtccacaatcatcttgaaagcatctatgaatatcacaagaaaaaattaatgttagggtaagaannnnnnnatacataaca |
105 |
Q |
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| T |
1413149 |
agaagatatgtttttccatagtccacaatcatcttgaaagtatctatgaatatcacaagaaaaaattaatgttagggtaagaatttttttatacataaca |
1413248 |
T |
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| Q |
106 |
tatgtagagtttaataattatatagaccgacaaagaggaatgttaacggcacatcctttaacacacactctttgattcgttaaaatatgatttgatagtg |
205 |
Q |
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| T |
1413249 |
tatgtagagtttaataattatatagaccgacaaagaggaatgttaacggcacatcctttgacacacactctttgattcgttaaaatatga-ttgatagcg |
1413347 |
T |
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| Q |
206 |
taggaggggggtggaccttttt |
227 |
Q |
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| T |
1413348 |
taggaggggggtggaccttttt |
1413369 |
T |
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