View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_73 (Length: 220)
Name: NF18809_low_73
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 47252663 - 47252828
Alignment:
| Q |
1 |
atatgaaaaataaaatgtagatgaatacaagtgtttcaaaagtgtgttattcttgattcatcacttcaaaaatacattgtatgttgcaaatgtatgtcta |
100 |
Q |
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| T |
47252663 |
atatgaaaaataaaatgtagatgaatacaagtgtttcaaaagtgtgttattcttgattcatcacttcaaaaatacattgtatgttgcaaatgtatgtcta |
47252762 |
T |
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| Q |
101 |
ttcattttatatttctctaaaaacttatcctaggacaataggatgtataaaatttgaaaaacacta |
166 |
Q |
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| T |
47252763 |
ttcattttatatttctctaaaaacttatcctaggacaataggatgtataaaatttgaaaaacacta |
47252828 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 47252849 - 47252907
Alignment:
| Q |
162 |
cactaccagactagcatcaaaagagatagccaaacaaaatgagtaattaagtaaccata |
220 |
Q |
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| T |
47252849 |
cactaccagactagcatcaaaagagatagccaaacaaaatgagtaattaagtaaccata |
47252907 |
T |
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