View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18809_low_8 (Length: 545)
Name: NF18809_low_8
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Complemental strand, 55636724 - 55636216
Alignment:
| Q |
19 |
atggaaaataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55636724 |
atggaaaataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcatcaacaagactacaatggttat |
55636625 |
T |
|
| Q |
119 |
tattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatcaaacatgaagaacaacataagcaataaagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55636624 |
tattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatgcccaaacatcaaacatgaagaacaacataagcaataaagaa |
55636525 |
T |
|
| Q |
219 |
attaacattgcattttattaaatgtgatattcaacatcatttgagtttaaaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55636524 |
attaacattgcattttattaaatgtgatattcaacatcatttgagtttaaaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctg |
55636425 |
T |
|
| Q |
319 |
taatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataat |
418 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55636424 |
taatgcatgatatagtacgacaagcttctttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataat |
55636325 |
T |
|
| Q |
419 |
agcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacatcagatgacataatacaagcagtgagaagagactagattcatggtaata |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55636324 |
agcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacatgagatgacataatacaagcagtgagaagagactagattcatggtaata |
55636225 |
T |
|
| Q |
519 |
agcaagtat |
527 |
Q |
| |
|
||||||||| |
|
|
| T |
55636224 |
agcaagtat |
55636216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 24 - 485
Target Start/End: Original strand, 55664287 - 55664748
Alignment:
| Q |
24 |
aaataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttattattg |
123 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||| |||| |||||||||||||| | ||||| |||||||||||||||| |||||||||| | ||| |
|
|
| T |
55664287 |
aaataagggtttctagtcacctaacagtccaactattactttgattggtgtaaccagagaactaaatatatcaccaacaaagctacaatggtaactat-- |
55664384 |
T |
|
| Q |
124 |
caccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatcaaacatgaagaacaacataagcaataaagaaattaa |
223 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||| |||||||||| |||| |||||||||||| ||||||| | ||| |||||||||||||| | |
|
|
| T |
55664385 |
caccacatctccatgttaaacaacgtgtac-ctttgattaatatgcatgtgatacccaaacatcaaacttgaagaaaagcatgagcaataaagaaatcga |
55664483 |
T |
|
| Q |
224 |
cattgcattttattaaatgtgatattcaacatcatttgagt-----ttaaaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctg |
318 |
Q |
| |
|
||||||| || |||||| ||||||| |||||||||||||| ||||||||||| |||||| || | | ||||| |||||||||| |||||||| |
|
|
| T |
55664484 |
cattgcacttcattaaacatgatatttaacatcatttgagtatataataaaaaagatgagatttagtaacctacttgtatctgctctctgtttccagctg |
55664583 |
T |
|
| Q |
319 |
taatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataat |
418 |
Q |
| |
|
||||| |||||||| ||||||| |||||| || | || |||| || ||||||||| ||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
55664584 |
taatgttggatatagtcaagcaagcttctttcttaatacttttatcgtgaaaatgtgtcaacagactcaaaaggcatgggagtgaaccatgattgataat |
55664683 |
T |
|
| Q |
419 |
agcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacatcagatgacataatac |
485 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||| ||| ||||| |||||||| ||||| |
|
|
| T |
55664684 |
agcctgacaaaaagagtctcaccaaatcaagttattctcac--gtgacacatgagatgacaaaatac |
55664748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 174 - 511
Target Start/End: Original strand, 52984694 - 52985034
Alignment:
| Q |
174 |
aatacgcaaacatcaaacatgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgatattcaacatcatttgagtttaaaaaag |
273 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| | |||||| |
|
|
| T |
52984694 |
aatacccaaacatcaaactagaagaaacgcataagcaataaagaaattaacattgcactttattaaacatgatatttaacatcatttgagtatcaaaaag |
52984793 |
T |
|
| Q |
274 |
atgggatttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagcttatttcttgatgatattcgt---gtgatt |
370 |
Q |
| |
|
||||||||| |||| || ||||||| |||||| | |||||||| ||| ||||||||| | ||| ||| | | || || |||| | |||||| |
|
|
| T |
52984794 |
atgggatttgttagcttacctgtatcatctctcttttcccagctgttatgtttgatatagtccagcaaacttttcttttaatactattattattgtgatt |
52984893 |
T |
|
| Q |
371 |
atttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacat |
470 |
Q |
| |
|
|| |||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| ||||| |
|
|
| T |
52984894 |
atgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggtgacacat |
52984993 |
T |
|
| Q |
471 |
cagatgacataatacaagcagtgagaagagactagattcat |
511 |
Q |
| |
|
|||||| | |||||||| | ||||||||||||||||||| |
|
|
| T |
52984994 |
gagatgaaaaaatacaaggggcgagaagagactagattcat |
52985034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 89 - 460
Target Start/End: Complemental strand, 54628409 - 54628043
Alignment:
| Q |
89 |
atatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatca |
188 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||| |||| |||| ||||||||| |
|
|
| T |
54628409 |
atatatcatcagcaagagtacaatggttattattgcaccacatctccatctcaaataacatgtag----caatttatatgtatgtgatacccaaacatca |
54628314 |
T |
|
| Q |
189 |
---aacatgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgatattcaacatcatttgagtttaaaaaagatgggatttatt |
285 |
Q |
| |
|
||| ||||| | ||||| ||| ||||||||||||||||| | |||||||| ||| ||| | |||||||||||| | ||||||||||||||||| |
|
|
| T |
54628313 |
tcaaacttgaagcaaaacatgagct-taaagaaattaacattgtactttattaagcatgaaatttagcatcatttgagtatcaaaaagatgggatttata |
54628215 |
T |
|
| Q |
286 |
agattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtgattatttgtcaacaggct |
385 |
Q |
| |
|
|| || ||||||| |||||||||| ||||||||||||| ||| | ||| | ||||||| |||||| || | ||| || | || ||||||||||| |
|
|
| T |
54628214 |
agcttacctgtatctgctctctgtttccagctgtaatgtttgacaaagtcctgcaagcttctttcttaatacttttcttggg---atgggtcaacaggct |
54628118 |
T |
|
| Q |
386 |
caaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcaca |
460 |
Q |
| |
|
||||| || |||||| |||||||||||| |||||||||||||||||| ||| || |||||| || ||||||||| |
|
|
| T |
54628117 |
caaaagacatgggagtaaaccatgattgacaatagcctgacaaaaagaatcctaccaaatcaggtaattctcaca |
54628043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 52 - 511
Target Start/End: Original strand, 55658098 - 55658549
Alignment:
| Q |
52 |
ccaactaatactctgattggtgt--aacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacat |
149 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55658098 |
ccaactattactctgattggtgtgtaacctgataactaaatatatcatcaacaagactataa--gttaatattgcaccacatctccatgttaaacaacat |
55658195 |
T |
|
| Q |
150 |
gtaagcttcaatttatatgcatgtaatacgcaaacatcaaacatgaagaacaacataagcaataaagaaattaacattgcattttattaaatgt----ga |
245 |
Q |
| |
|
|| |||||||||||||||| |||| ||| ||||||| | ||||||||||| ||||| |||||||||| |||||| | | || |
|
|
| T |
55658196 |
gt-agcttcaatttatatg---------------catctaacttgaagaaaagcataagcaatacagaaactaacattgcacattattatacatgatcga |
55658279 |
T |
|
| Q |
246 |
tattcaacatcatttgagtttaaaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagctt |
345 |
Q |
| |
|
||| ||||| |||||||| |||||||||||||||||||||| || | ||||| |||| |||| |||| || |||| ||||||| | | ||||| | |
|
|
| T |
55658280 |
tatgtaacattatttgagtataaaaaagatgggatttattagcttacttgtatccgctccctgtttccaactacaatgtttgatataatccagcaagcgt |
55658379 |
T |
|
| Q |
346 |
atttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaat |
445 |
Q |
| |
|
||||| || | | | |||| || | ||||||||||||||| | | |||||| ||||||||||||||||||||||||||| ||||||| || |||| |
|
|
| T |
55658380 |
ccttcttaatactttccttgtggttttggatcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaat |
55658479 |
T |
|
| Q |
446 |
caagttattctcacaggtggcaca---tcagatgac-ataatacaagcagtgagaagagactagattcat |
511 |
Q |
| |
|
||||| ||||||||||||| |||| | ||||||| | || ||||| ||||||||||||||||||||| |
|
|
| T |
55658480 |
caagtaattctcacaggtgacacatattgagatgacaaaaagacaaggggtgagaagagactagattcat |
55658549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 243 - 484
Target Start/End: Complemental strand, 51316208 - 51315967
Alignment:
| Q |
243 |
tgatattcaacatcatttgagtttaaaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaag |
342 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||||||| ||||| | || ||||||| |||||||||| |||||||||||| ||||| ||| | |||| |
|
|
| T |
51316208 |
tgatatttaacgtcatttgagtataaaaaagatgggaattatttgtttacctgtatctgctctctgttaccagctgtaatgtttgatacagtcctgcaag |
51316109 |
T |
|
| Q |
343 |
cttatttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaa |
442 |
Q |
| |
|
||| || ||| || | || |||||| || |||||||||||||||| ||| ||||||||||||||||||||| | |||||||||||||| ||||| | |
|
|
| T |
51316108 |
cttcttgcttaatacttttgttgtgatcatgggtcaacaggctcaaaaggcattggagtgaaccatgattgataacaacctgacaaaaagagccccacca |
51316009 |
T |
|
| Q |
443 |
aatcaagttattctcacaggtggcacatcagatgacataata |
484 |
Q |
| |
|
||||| ||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
51316008 |
aatcaggttattcaaacaggtgacacatgagatgacataata |
51315967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 52 - 470
Target Start/End: Original strand, 55619748 - 55620154
Alignment:
| Q |
52 |
ccaactaatactctgattggtgt--aacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacat |
149 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55619748 |
ccaactattactctgattggtgtgtaacctgataactaaatatatcatcaacaagactataa--gttaatattgcaccacatctccatgttaaacaacat |
55619845 |
T |
|
| Q |
150 |
gtaagcttcaatttatatgcatgtaatacgcaaacatcaaacatgaagaacaacataagcaataaagaaattaacattgcattttattaaatgt----ga |
245 |
Q |
| |
|
|| |||||||||||||||| |||| ||| ||||||| | ||||||||||| ||||| |||||||||| |||||| | | || |
|
|
| T |
55619846 |
gt-agcttcaatttatatg---------------catctaacttgaagaaaagcataagcaatacagaaactaacattgcacattattatacatgatcga |
55619929 |
T |
|
| Q |
246 |
tattcaacatcatttgagtttaaaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagctt |
345 |
Q |
| |
|
||| ||||| |||||||| |||||||||||||||||||||| || | ||||| |||| |||| |||| || |||| ||||||| | | ||||| | |
|
|
| T |
55619930 |
tatgtaacattatttgagtataaaaaagatgggatttattagcttacttgtatccgctccctgtttccaactacaatgtttgatataatccagcaagcgt |
55620029 |
T |
|
| Q |
346 |
atttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaat |
445 |
Q |
| |
|
||||| || | | | |||| || | ||||||||||||||| | | |||||| ||||||||||||||||||||||||||| ||||||| || |||| |
|
|
| T |
55620030 |
ccttcttaatactttccttgtggttttggatcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaat |
55620129 |
T |
|
| Q |
446 |
caagttattctcacaggtggcacat |
470 |
Q |
| |
|
||||| ||||||||||||| ||||| |
|
|
| T |
55620130 |
caagtaattctcacaggtgacacat |
55620154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 252 - 445
Target Start/End: Original strand, 54861354 - 54861547
Alignment:
| Q |
252 |
acatcatttgagtttaaaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagcttatttct |
351 |
Q |
| |
|
||||||||||||| | |||| |||||||||||||| || ||||||| |||||||||| ||||||||||||| ||| | ||| | ||| ||| ||||| |
|
|
| T |
54861354 |
acatcatttgagtatcaaaataatgggatttattagcttacctgtatctgctctctgtttccagctgtaatgtttgacacagtccagcaaacttctttct |
54861453 |
T |
|
| Q |
352 |
tgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaat |
445 |
Q |
| |
|
| || | ||| ||||| || | |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54861454 |
taatacttttcttgtgactactggtcaacaggctcaaaaggcatgggagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaat |
54861547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 52 - 470
Target Start/End: Original strand, 55627052 - 55627458
Alignment:
| Q |
52 |
ccaactaatactctgattggtgt--aacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacat |
149 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||| || |||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
55627052 |
ccaactattactctgattggtgtgtaacctgataactaaatatatcatcaacaagactataa--gttaatattgcaccacatctccatgttaaaaaacat |
55627149 |
T |
|
| Q |
150 |
gtaagcttcaatttatatgcatgtaatacgcaaacatcaaacatgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgat--- |
246 |
Q |
| |
|
||| ||||||| |||||||||| ||||| ||||||| | ||||||||||| ||||| |||||||||| |||||| | |||| |
|
|
| T |
55627150 |
gta-gcttcaaattatatgcat---------------caaacttgaagaaaagcataagcaatacagaaactaacattgcacattattatacatgatcga |
55627233 |
T |
|
| Q |
247 |
-attcaacatcatttgagtttaaaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagctt |
345 |
Q |
| |
|
|| ||||| |||||||| |||||||||||||||||||||| || | ||||| |||| |||| |||| || |||| ||||||| | | ||||| | |
|
|
| T |
55627234 |
tatgtaacattatttgagtataaaaaagatgggatttattagcttacttgtatccgctccctgtttccaactacaatgtttgatataatccagcaagcgt |
55627333 |
T |
|
| Q |
346 |
atttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaat |
445 |
Q |
| |
|
||||| || | | | |||| || | ||||||||||||||| | | |||||| ||||||||||||||||||||||||||| ||||||| || |||| |
|
|
| T |
55627334 |
ccttcttaatactttccttgtggttttggatcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaat |
55627433 |
T |
|
| Q |
446 |
caagttattctcacaggtggcacat |
470 |
Q |
| |
|
||||| ||||||||||||| ||||| |
|
|
| T |
55627434 |
caagtaattctcacaggtgacacat |
55627458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 52983850 - 52983957
Alignment:
| Q |
70 |
ggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgc |
169 |
Q |
| |
|
||||||||||| ||||| |||||| || ||| |||||| ||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
52983850 |
ggtgtaacctgagaactaaatataccatcaagaagactgcaatggttactatagcaccacatctccattttaaacaacatgt-agcttcaatttatatgc |
52983948 |
T |
|
| Q |
170 |
atgtaatac |
178 |
Q |
| |
|
|||| |||| |
|
|
| T |
52983949 |
atgtgatac |
52983957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 425
Target Start/End: Original strand, 3671556 - 3671616
Alignment:
| Q |
365 |
gtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctga |
425 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||||||||||| || |||||||||| |
|
|
| T |
3671556 |
gtgattatgggtcaacaggctcaaaaggcatgggagtgaaccatgatcgacaatagcctga |
3671616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 268 - 506
Target Start/End: Complemental strand, 9890800 - 9890561
Alignment:
| Q |
268 |
aaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtg |
367 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||| | ||||||| |||| | || | | | ||| |
|
|
| T |
9890800 |
aaaaagatgggatttattagattacctgtatctgctctctgtttccagctgtaatgtttgatatagtccagcaagcttctttcctaatagtttcctcgtg |
9890701 |
T |
|
| Q |
368 |
attatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggca |
467 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||| ||| || |
|
|
| T |
9890700 |
attatgggtcaacaggctcaaaaggcatgggagtgaaccatgatcgagaatagcctgacaaaaagagtcccacaaaatcaggtaattctcacaagtgaca |
9890601 |
T |
|
| Q |
468 |
catcaga-tgacataatacaagcagtgagaagagactaga |
506 |
Q |
| |
|
||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
9890600 |
catgagattgacataatacaaggggtgagaagagactaga |
9890561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 9890997 - 9890808
Alignment:
| Q |
39 |
gtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatg |
138 |
Q |
| |
|
|||||| ||||| ||||||| |||| |||||||||||||| | ||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
9890997 |
gtcacctaacaatccaactattactttgattggtgtaaccagagaactaaatatatcatcaacaagactacaatagttattattgcacaacatctccatg |
9890898 |
T |
|
| Q |
139 |
ttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatcaaacatgaagaacaacataagcaataaagaaattaacattgca |
230 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||| || |||||||| ||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
9890897 |
ttaaacaacatgt-agtttcaatttatatgcatgt-gtacccaggcatcaaacttgaagaaaagcataagcaataaagaaaataacattgca |
9890808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 181 - 519
Target Start/End: Complemental strand, 13402939 - 13402604
Alignment:
| Q |
181 |
aaacatcaaacatgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgatattcaacatcatttgagtt-taaaaaagatggga |
279 |
Q |
| |
|
|||||||||| |||| || | ||||| |||||| || ||||||||||||||| |||| | ||||||| ||||||| ||||||| | | ||| |||||| |
|
|
| T |
13402939 |
aaacatcaaaattgaataaaagcataaacaataa-gatattaacattgcatttaattagacatgatatttaacatcaattgagttattataaacatggga |
13402841 |
T |
|
| Q |
280 |
tttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtgattatttgtcaa |
379 |
Q |
| |
|
||| || || ||||||| |||||| ||| ||||||||||||| ||||||||| | ||||||| |||||| || | ||| ||||||||| ||||| |
|
|
| T |
13402840 |
tttgc-aggttacctgtatctgctctttgtttccagctgtaatgtttgatatagtccagcaagcttctttcttaatacttttcttgtgattatgggtcaa |
13402742 |
T |
|
| Q |
380 |
caggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtccc-acaaaatcaagttattctcacaggtggcacatcagatgac |
478 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||| | | ||||| ||||| ||| ||||||| |
|
|
| T |
13402741 |
caggctcaaaagacatgggagtgaaccatgaccaataatagcctgacaaaaagagtcccaacaaaatcagataactctcaaaggtgatgcatgagatgac |
13402642 |
T |
|
| Q |
479 |
ataatacaagcagtgagaagagactagattcatggtaataa |
519 |
Q |
| |
|
|| |||| | ||||||||| |||||||| |||||||||| |
|
|
| T |
13402641 |
--aaaacaaac-gtgagaagaaactagattaatggtaataa |
13402604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 13403078 - 13402949
Alignment:
| Q |
19 |
atggaaaataagggtttacggtcaccgaacaacccaactaatactctgattggtgta--acctgtgaactgaatatatcaccaacaagactacaatggtt |
116 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||| ||||| | |||||| ||||||||| ||||| ||||| |||||||| ||||||||||||||| | |
|
|
| T |
13403078 |
atggaaaataagggctta--gtcacctaacaaaccaacaattactctaattggtgtataacctgggaactaaatatatct---acaagactacaatggct |
13402984 |
T |
|
| Q |
117 |
attattgcaccacatctccatgttaaacaacatgt |
151 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| |
|
|
| T |
13402983 |
gttattgcaccagatctccatgttaaacagcatgt |
13402949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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