View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_low_9 (Length: 541)
Name: NF18809_low_9
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 159 - 531
Target Start/End: Original strand, 28543819 - 28544191
Alignment:
| Q |
159 |
ggccaacattttaccgaatatggaaaaagaagtcgacggaaggattccaatcgttgccttacttggtggctctattcagctccatgttatggttatatta |
258 |
Q |
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| T |
28543819 |
ggccaacattttaccgaatatggaaaaagaagtcgacggaaggattccaatcgttgccatacttggttgctctattcagctccatgttatggttatatta |
28543918 |
T |
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| Q |
259 |
tggtttcgtcaagaaacatgcttttctactcattacgattaattcagctgggtgtgtcattgaaacaatatatatcgtcacatacctaatctacgccacc |
358 |
Q |
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| T |
28543919 |
tggtttcgtcaagaaacatgcttttctactcattaccattaattcagctgggtgtgtcattgaaacaatatatatcgtcacatacctaatctacgccacg |
28544018 |
T |
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| Q |
359 |
aaagatgcgagggtaaaccctaatcaccgattatacttacnnnnnnnnnnnnnnnnnnnactaatcaacttgatatgacaagtataatctcattagtttt |
458 |
Q |
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| T |
28544019 |
aaagatgcaagggtaaaccctaatcaccgattatacttactttttagttttatttttttactaatcaacttgatatgacaagtataatctcattagtttt |
28544118 |
T |
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| Q |
459 |
gttctaacatgatttttaatcatagatcttgacgattaaattgttcatggcgatgaatgtggcctgttctgtg |
531 |
Q |
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| T |
28544119 |
gttctaacatgatttttaatcgtagatcttgacgattaaattgttcatggcgatgaatgtggcctgttctgtg |
28544191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 28543678 - 28543743
Alignment:
| Q |
18 |
tgatgcttaggtaacatcatttcctccatggtgtacttggcacccctgtaagtatatgttaatttc |
83 |
Q |
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| T |
28543678 |
tgatgcttaggtaacatcatttcctccatggtgtacttggcacccctgtaagtatatgttaatttc |
28543743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 1185932 - 1185887
Alignment:
| Q |
26 |
aggtaacatcatttcctccatggtgtacttggcacccctgtaagta |
71 |
Q |
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| T |
1185932 |
aggtaacataatttcctgcatggtgtacttggctcctctgtaagta |
1185887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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