View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1880_high_1 (Length: 777)

Name: NF1880_high_1
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1880_high_1
NF1880_high_1
[»] chr7 (1 HSPs)
chr7 (9-756)||(7653934-7654682)


Alignment Details
Target: chr7 (Bit Score: 619; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 9 - 756
Target Start/End: Original strand, 7653934 - 7654682
Alignment:
Q  9 caataatatctcgaataggattacttcttgtgcaagaaacatattagaaaccnnnnnnnnnnnnnnnnnnccatcttgtgcaagaaacccacttgaagga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||    
T  7653934 caataatatctcgaataggattacttcttgtgcaagaaacatattagaaaccaaaaagtaaaaaagaaaaccatcttgtgcaagaaacccacttgaagga 7654033  T
Q  109 tactattgatacattgatgattaatatgaaagtatatgtggctagcaatcatgatttacttttctaacactcgtatacaaaatgtctccttactcatgtc 208  Q
    || |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7654034 tattattgatacattgatgattaatatgaaagtatatgtgattagcaatcatgatttacttttctaacactcgtatacaaaatgtctccttactcatgtc 7654133  T
Q  209 acaacacaatttataatatatatcacactcattccattgcatcgccactatattattttgaaactaaaatgcattaaaaataaacttggtcagttctgtt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7654134 acaacacaatttataatatatatcacactcattccattgcatcgccactatattattttgaaactaaaatgcattaaaaataaacttggtcagttctgtt 7654233  T
Q  309 tgtcctcaaatgttaaggctacccgttactttcggtgaaaatattacactatcataatcaaccaatggtttttactatgatctccaatttcacctacagc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7654234 tgtcctcaaatgttaaggctacccgttactttcggtgaaaatattacactatcataatcaaccaatggtttttactgtgatctccaatttcacctacagc 7654333  T
Q  409 tacatcaattcacagccacatacatgtcaaaactatgaccaagtagctcactcacttcactagctgcatgca----tggcacatataattgaaacctata 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||||||||||||    
T  7654334 tacatcaattcacagccacatacatgtcaaaactatgaccaagtagctcactcacttcactagctgcatgcatagcttgcacatataattgaaacctata 7654433  T
Q  505 cagtctcacacagtgaccgtttccttggccgtttattttggtatttaaacactaaacaaagctcttatagtttccccttaatttcaaccaaattatacag 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  7654434 cagtctcacacagtgaccgtttccttggccgtttattttggtatttaaacactaaacaaagctcttatagtgtccccttaatttcaaccaaattata--- 7654530  T
Q  605 aaaagaaatataatcaagaaacacataaataagaatctgatcttctcttttgatctgtttctataggttctgattcttgagataattaataataataatg 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||  |||||||||  ||||||||||||||||||    
T  7654531 aaaagaaatataatcaagaaacacataaataagaatctgatcttctctttttatctgtttctataagtttcgattcttgaactaattaataataataatg 7654630  T
Q  705 gcaatccatagaattgcaattggatctcctggagaggctggtcaacctgatg 756  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7654631 gcaatccatagaattgcaattggatctcctggagaggctggtcaacctgatg 7654682  T

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