View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1880_high_2 (Length: 745)
Name: NF1880_high_2
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1880_high_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 683; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 7 - 725
Target Start/End: Original strand, 18024765 - 18025482
Alignment:
| Q |
7 |
aatattggagagatttggaagggagagatgatgtgttaataaaattttagaagattgactaaaatcctcccttctctcaaccaaacataatatctcatct |
106 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18024765 |
aatattggagggatttggaagggagagatgatgtcttaataaaattttagaagattgactaaaatcctcccttctctcaaccaaacataatatctcatct |
18024864 |
T |
|
| Q |
107 |
aatcctttcctccccctcccttccatttaaattattctatttgtttgaaccaaacatgcccttaataaattggtcttcctcttaagctaatctagtttca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18024865 |
aatcctttcctccccctcccttccatttaaattattctatttgtttgaaccaaacatgcccttaataaattgatcttcctcttaagctaatctagtttca |
18024964 |
T |
|
| Q |
207 |
ctatcattatcccgtgttgggaatatgcaataaaagatatattaatactatattcaaagtgataaaagagaactatgagtcgactcttttacaacgaatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18024965 |
ctatcattatcccgtgttgggaatatgcaataaaagatatattaatactatattcaaagtgataaaagagaaatatgagtcgactcttttacaacgaatt |
18025064 |
T |
|
| Q |
307 |
cttacacgagcagccacatcagtcgcaaccaaaaaatccacttgctgcttcctgaactgttccaaagcctatacaaataaccagaagtgataagtattgc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18025065 |
cttacacgagcagccacatcagtcgcaaccaaaaaatccacttgctgcttcctgaactgttccaaagcctatacaaataaccagaagtgataagtattgc |
18025164 |
T |
|
| Q |
407 |
cacaacagcattaaatgtagcaattccttttagcagaaaatttatgaataaattttacaaaaaataatccgaatcagcttcatcaatttagtatcctaaa |
506 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18025165 |
cacaacagcattaaatgtagcaattccttttagcagaaaatttatgaataaattttacaaaaaataatctgaatcagcttcatcaatttagtatcctaaa |
18025264 |
T |
|
| Q |
507 |
aatatgatagtaaaacaataattttataactacaaatccatacaaagagctaaaatgcacagatcaaaatatgcaacatacatcaagacgttgggcctga |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18025265 |
aatatgatagtaaaacaataattttataactac-aagccatacaaagagctaaaatgcaaagatcaaaatatgcaacatacatcaagacgttgggcctga |
18025363 |
T |
|
| Q |
607 |
gtaagatttccatgaagctcagcagctttcaatccagataatccaaaaataatcctcagcctatgtgccgcttgctttgttccactgcatatcaaatgcg |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18025364 |
gtaagatttccatgaagctcagcagctttcaatccagataatccaaaaataatcctcagcctatgtgccgcttgctttgttccactgcatatcaaatgcg |
18025463 |
T |
|
| Q |
707 |
aaagtatttagtagttaga |
725 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
18025464 |
aaagtatttagtagttaga |
18025482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 574 - 613
Target Start/End: Complemental strand, 17231419 - 17231380
Alignment:
| Q |
574 |
aatatgcaacatacatcaagacgttgggcctgagtaagat |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17231419 |
aatatgcaacatacatcaagacgttgggcctgagtaagat |
17231380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 17231458 - 17231416
Alignment:
| Q |
131 |
atttaaattattctatttgtttgaaccaaacatgcccttaata |
173 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
17231458 |
atttaaattattctatttgtttgaaccaaacatgcctttaata |
17231416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 72 - 726
Target Start/End: Original strand, 19674913 - 19675556
Alignment:
| Q |
72 |
cctcccttctctcaaccaaacataatatctcatctaatcctttcctccccctcccttccatttaaattattctatttgtttgaaccaaacatgcccttaa |
171 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||| |||||| ||||| ||||||| |||||||| |
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|
| T |
19674913 |
cctcccttctcccaaccaaacacaatatctcatccaatcctttat-----ctcccttccatttaaattcctctattcatttgagccaaacaggcccttaa |
19675007 |
T |
|
| Q |
172 |
taaattggtcttcctcttaagctaatctagtttcactatcattatcccgtgttgggaatatgcaataaaagatatattaatactatattcaaagtgataa |
271 |
Q |
| |
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||||| | || |||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||| |
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|
| T |
19675008 |
caaatttatgtttctcttaagctaacctagtttcactatcattatcttgtgttgggaatatagaataaaa--tatattaatactagattcaaagtgataa |
19675105 |
T |
|
| Q |
272 |
aagagaactatgagtcgactcttttacaacgaattcttacacgagcagccacatcagtcgcaaccaaaaaatccacttgctgcttcctgaactgttccaa |
371 |
Q |
| |
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| |||| || || |||| || || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || | |||||| |
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| T |
19675106 |
ga-agaaataaacttcagttcttgtagaatagattcttacacgagcagccacatcagttgcaaccagaaaatccacttgctgcttcctaaattcttccaa |
19675204 |
T |
|
| Q |
372 |
agcctatacaaataaccagaagtgat-aagtattgccacaacagcattaaatgtagcaattccttttagcagaaaatttatgaataaattttacaaaaaa |
470 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| |||||| |||| | ||| ||||| || ||||| | ||| |||||||| |
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| T |
19675205 |
agcctatacaaataaccagaagtgagcaaatattgccacaatagcattcaatgctgaaatccctttcagtagaaatt--------aaa----acaaaaaa |
19675292 |
T |
|
| Q |
471 |
taa-tccgaatcagcttcatcaatttagtatcctaaaaatatgatagtaaaacaataa------ttttataactacaaatccatacaaagagctaaaatg |
563 |
Q |
| |
|
|| ||| ||| ||| ||| |||||||||| || |||||| ||| | | | | ||||| || |||||||||| | | ||||||| ||||||| |
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|
| T |
19675293 |
caaatccaaattagcatcaccaatttagtaacccaaaaatgtgacaatgacataataagtataattatataactacagagaaaaacaaagacctaaaata |
19675392 |
T |
|
| Q |
564 |
cacagatcaaaatatgcaacatacatcaagacgttgggcctgagtaagatttccatgaagctcagcagctttcaatccagataatccaaaaataatcctc |
663 |
Q |
| |
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||| |||| |||| | ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19675393 |
gacacatcagaataagaaacatactcccagacgttgggcctgagtaagatttccatgaagctcagcagctttcaatccagataatccaaatataatcctc |
19675492 |
T |
|
| Q |
664 |
agcctatgtgccgcttgctttgttccactgcatatc-aaatgcgaaagtatttagtagttagag |
726 |
Q |
| |
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| |||||||| |||||||| ||||||||||||||| ||||| |||| |||| ||||||||||| |
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|
| T |
19675493 |
aatctatgtgcagcttgcttcgttccactgcatatcaaaatgagaaattattaagtagttagag |
19675556 |
T |
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