View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1880_high_3 (Length: 714)

Name: NF1880_high_3
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1880_high_3
NF1880_high_3
[»] chr2 (1 HSPs)
chr2 (35-697)||(37796700-37797362)


Alignment Details
Target: chr2 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 35 - 697
Target Start/End: Original strand, 37796700 - 37797362
Alignment:
Q  35 gaagaggtaaagatgagtgagaggttaataatttgagagataaagacataaagtggaaacaaagagtgtaggagggagagtagaaaatgattaaggtcct 134  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37796700 gaagaggtaaagatgagtgagaggttaacaatttgagagataaagacataaagtggaaacaaagagtgtaggagggagagtagaaaatgattaaggtcct 37796799  T
Q  135 tagacaagaaaccctttgttgtgaaaacaaaaagtcgattgcttattgtaccagaagtctgtatggcaaggccaaaaagagggaagtgaatttagtgccg 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37796800 tagacaagaaaccctttgttgtgaaaacaaaaagtcgattgcttattgtaccagaagtctgtatggcaaggccaaaaagagggaagtggatttagtgccg 37796899  T
Q  235 taaaaaacaacacaatttttattttaattattcgatgagtttgacaaagttacaataataccgtctaataaagagatatttatatttccactgatgcact 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37796900 taaaaaacaacacaatttttattttaattattcgatgagtttgacaaagttacaataataccgtctaataaagagatatttatatttccactgatgcact 37796999  T
Q  335 tatttagaagaatcttgatcttcattttcctcacccggggcatttcttttatcatttacttcttcctcgtatggtgtttcactatagggtgttgtcacct 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37797000 tatttagaagaatcttgatcttcattttcctcacccggggcatttcttttatcatttacttcttcctcgtatggtgtttcactatagggtgttgtcacct 37797099  T
Q  435 ggtttatccattatctgcaaattcttgcactagctttgccttttcattgccaagctctttgtcaataaaccttacatgaattgattcttccaccattaag 534  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37797100 ggtttatccattatctgcaaattcttgcactagtttttccttttcattgccaagctctttgtcaataaaccttacatgaattgattcttccaccattaag 37797199  T
Q  535 gtttcttcgttatatactctttatactctaggtcgttcaaaatatcctcaaaacacatacatttgtggtttgaaaataagaattcattacaaccaaattg 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37797200 gtttcttcgttatatactctttatactctaggtcgttcaaaatattctaaaaacacatacatttgtggtttgaaaataagaattcattacaaccaaattg 37797299  T
Q  635 atgaaaataagagatattagattttctacctttccataattcataagaagtattcttcaaaat 697  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  37797300 atgaaaataagagatattggattttctacctttccataattcataagtagtattcttcaaaat 37797362  T

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