View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1880_high_5 (Length: 490)
Name: NF1880_high_5
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1880_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 15952486 - 15952844
Alignment:
| Q |
11 |
cagagaagtagcaaagatctgcaaacatggcttcatggtcagttggacacagaagacaacccc----caagagaataccatgctttagttgaattccttg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15952486 |
cagagaagtagcaaagatctgcaaacatggcttcatggtcagttggacacagaagacaaccccggcccaagagaataccatgctttagttgaattccttg |
15952585 |
T |
|
| Q |
107 |
caaagaaataatagatgtgaataggattaaaagccctaaaaacgctgctgtcatatttgacaagattgtatacaccattacccgcaagagaacagaaccc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15952586 |
caaagaaataatagatgtgaataggattaaaagccctaaaaacgctgctgtcatatttgacaagatagtatacaccattacccgcaagagaacagaaccc |
15952685 |
T |
|
| Q |
207 |
aatgcaggtcctacatcaagcccaaatttacttgttccatacttctgtaaactgaacaaaacgacaaggcaagcaacagaaatcatcaccacttcatctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15952686 |
aatgcaggtcctacatcaagcccaaatttacttgttccatacttctgtaaactgaacaaaacgacaaggcaagcaacagaaatcatcaccacttcatctt |
15952785 |
T |
|
| Q |
307 |
gttgaattgcatataccccaaccttcaagcctttaacacaatttgagtgggtttgagtt |
365 |
Q |
| |
|
|| ||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
15952786 |
gtcgaattgcatctaccccaaccttcaagccgttaacacaatttgattgggtttgagtt |
15952844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 411 - 490
Target Start/End: Original strand, 15952878 - 15952957
Alignment:
| Q |
411 |
gtcatttctgtatccatgattacaatcaagaaaagtttgttaaatcttaggggatcaacgtgtaatcacatgaaaaatcc |
490 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15952878 |
gtcatttttgtatccatgattacaatcaagaagagtttgttaaatcttaggggattaacgtgtaatcacatgaaaaatcc |
15952957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 50 - 305
Target Start/End: Complemental strand, 29924950 - 29924688
Alignment:
| Q |
50 |
cagttggacacagaagacaacccccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaac |
149 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29924950 |
cagttgcacacagaagacagcccccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaac |
29924851 |
T |
|
| Q |
150 |
gctgctgtcatatttgacaagattgtatacaccattacccgcaagagaacagaacc-------caatgcaggtcctacatcaagcccaaatttacttgtt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
29924850 |
gctgctgtcatatttgacaagattgtatacaccattgcccgcaagagaacagaaccatataaacaatgcaggtcctacagcaagcccaactttacttgtt |
29924751 |
T |
|
| Q |
243 |
ccatacttctgtaaactgaacaaaacgacaaggcaagcaacagaaatcatcaccacttcatct |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29924750 |
ccatacttctgtaaactgaacaaaacgacaaggcaagcaacagaaatcatcaccacttcatct |
29924688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 29926703 - 29926669
Alignment:
| Q |
11 |
cagagaagtagcaaagatctgcaaacatggcttca |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
29926703 |
cagagaagtagcaaagatctgcaaacatggcttca |
29926669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 29924295 - 29924255
Alignment:
| Q |
304 |
cttgttgaattgcatataccccaaccttcaagcctttaaca |
344 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
29924295 |
cttgttgaattgcatctaccccaaccttcaagccattaaca |
29924255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 344
Target Start/End: Original strand, 10032629 - 10032936
Alignment:
| Q |
23 |
aaagatctgcaaacatggcttcatggtcagttggacacagaagacaacccccaagagaataccatgctttagttgaattccttgcaaagaaataatagat |
122 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10032629 |
aaagatctgcaaacatggcttcagagctagttggac------gacaacccccaagagaataccatgctttagttgaattccttgcaaagaaataatagat |
10032722 |
T |
|
| Q |
123 |
gtgaataggattaaaagccctaaaaacgctgctgtcatatttgacaagattgtatacaccattacccgcaagagaacagaacccaatgcaggtcctacat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || | |
|
|
| T |
10032723 |
gtgaataggattaaaagccctaaaaacgttgttgtcatatttgacaagattgtatacaccattgcccgcaagagaacagaacc--atg-------taaac |
10032813 |
T |
|
| Q |
223 |
caagc-ccaaatttacttgttccatacttctgtaaactgaacaaaacgacaaggcaagcaacagaaatcatcaccacttcatcttgttgaattgcatata |
321 |
Q |
| |
|
| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10032814 |
aatgcagcaactttacttgttccatacttttgtaaactgaacaaaacgacaaggcaagcaatagaaatcatcaccacttcatcttgttgaattgcatcta |
10032913 |
T |
|
| Q |
322 |
ccccaaccttcaagcctttaaca |
344 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
10032914 |
ccccaaccttcaagccgttaaca |
10032936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 52 - 305
Target Start/End: Complemental strand, 1636945 - 1636685
Alignment:
| Q |
52 |
gttggacacagaagacaacccccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaacgc |
151 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||| || ||||| || || | |
|
|
| T |
1636945 |
gttgcacacagaagacaacccccgagagaataccatgctttagttgagttcctcttgaagaaatagtagatatgaatgggattgaatgccctcaagacac |
1636846 |
T |
|
| Q |
152 |
tgctgtcatatttgacaagattgtatacaccattacccgcaagagaacagaacc-------caatgcaggtcctacatcaagcccaaatttacttgttcc |
244 |
Q |
| |
|
| ||||||||||||| ||||||||||| || |||| ||||||||||| |||| ||| ||||||||||| |||| || | |||||||||||| |
|
|
| T |
1636845 |
ttctgtcatatttgagaagattgtatatcccgataccggcaagagaacaaaaccatatgaacaaagcaggtcctactgcaagtcccactttacttgttcc |
1636746 |
T |
|
| Q |
245 |
atacttctgtaaactgaacaaaacgacaaggcaagcaacagaaatcatcaccacttcatct |
305 |
Q |
| |
|
|||||| |||| |||||||||||| | ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
1636745 |
atacttttgtacactgaacaaaacaatcaggcaggcaactgaaatcatcaccacttcatct |
1636685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University