View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1880_high_9 (Length: 319)
Name: NF1880_high_9
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1880_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 74 - 303
Target Start/End: Complemental strand, 40196068 - 40195839
Alignment:
| Q |
74 |
catatttaacatttgattaaataaaactattaggcattagccatcaagagaaagccactcaccgggcgaccgaatttagacaattgtgctggtttagctc |
173 |
Q |
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| T |
40196068 |
catatttaacatttgattaaataaaactattaggcattagccatcaagagaaagccactcaccgggcgaccaaatttagataattgtgctggtttagctc |
40195969 |
T |
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| Q |
174 |
tccgttgtccaggataaccttaaaattacaacaagaaaaagtaaaactaaaatgacatgagtaagaaaactgttattaagattcagattgtaaattgagg |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40195968 |
tccgttgtccaggataaccttaaaattacaacaagaaaaagtaaaactaaaatgacatgagtaagaaaactgttattaagattcagattgtaaattgagg |
40195869 |
T |
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| Q |
274 |
atacattttgacataatttatcgttgaaag |
303 |
Q |
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| T |
40195868 |
atacattttgacataatttatcattgaaag |
40195839 |
T |
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