View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1880_low_10 (Length: 303)
Name: NF1880_low_10
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1880_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 48882574 - 48882281
Alignment:
| Q |
10 |
agatgaataagagaaaagagacttacatattatgaattgcccctcagagttccagaagcaaaatccatattttgatatggcgttgttttgaaaaatttat |
109 |
Q |
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| T |
48882574 |
agatgaataagagaaaagagacttacatattatgaattgcccctcagagttccagaagcaaagtccatattttgatatcgcgttgttttgaaaaatttat |
48882475 |
T |
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| Q |
110 |
gagtccatgttgcactttaatgcacccaacggaggtttgacccaagagatattgtggtccgagttttgtacctaaggtttaactctttgcacacaattcc |
209 |
Q |
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| T |
48882474 |
gagtccatgttgcactttaatgcacccaacggaggtttgacccaagagatattgtggtccgagttttgtacctaaggtttaactctttgcacacaactcc |
48882375 |
T |
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| Q |
210 |
attcatggagagtatcttttgctcgagggatagtgaaagcagttggggtgtctaacgactctcaaagctttgtgttacgactcttccaaagact |
303 |
Q |
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| T |
48882374 |
attcatggagagtaacttttgctcgagggatagtgaaagcagttggggtgtctaacgactctcaaagctttgtgttacgactcttccaaagact |
48882281 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 52964560 - 52964653
Alignment:
| Q |
143 |
ggtttgacccaagagatattgtggtccgagttttgtacctaaggtttaactctttgcacacaattccattcatggagagtatcttttgctcgag |
236 |
Q |
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| T |
52964560 |
ggtttgacccaagagatgatgtggttcgaattttgtacctgtggtttagctctttgcatacaagtccattcatggagtgtatcctttgctcgag |
52964653 |
T |
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 51492179 - 51492272
Alignment:
| Q |
143 |
ggtttgacccaagagatattgtggtccgagttttgtacctaaggtttaactctttgcacacaattccattcatggagagtatcttttgctcgag |
236 |
Q |
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| T |
51492179 |
ggtttgacccaagagattatgtggttcgaattttgtacctgtggtttagctctttgcatacaagtccattcatggagtgtatcctttgctcgag |
51492272 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 10813557 - 10813650
Alignment:
| Q |
143 |
ggtttgacccaagagatattgtggtccgagttttgtacctaaggtttaactctttgcacacaattccattcatggagagtatcttttgctcgag |
236 |
Q |
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| T |
10813557 |
ggtttaacccaagagatgatgtggttcgaattttgtacctgtggtttagctctttgcatacaagtccattcgtggagtgtatcctttgctcgag |
10813650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 33495526 - 33495630
Alignment:
| Q |
141 |
gaggtttgacccaagagatattgtggtccgagttttgtacctaaggtttaactctttgcacacaattccattcatggagagtatcttttgctcgagggat |
240 |
Q |
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||||||| ||||||||||||| || |||| |||| || ||||| ||| ||||||||| |||||||||||||| ||||| || |||||||||| ||| |
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| T |
33495526 |
gaggtttaacccaagagatatgatgatccgggtttagtggctaagtttttgctctttgcatgcaattccattcatgaagagtgtcatttgctcgagagat |
33495625 |
T |
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| Q |
241 |
agtga |
245 |
Q |
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|||| |
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| T |
33495626 |
ggtga |
33495630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 10530080 - 10530114
Alignment:
| Q |
266 |
gactctcaaagctttgtgttacgactcttccaaag |
300 |
Q |
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| T |
10530080 |
gactcccaaagctttgtgttacgactcttccaaag |
10530114 |
T |
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