View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1880_low_11 (Length: 242)

Name: NF1880_low_11
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1880_low_11
NF1880_low_11
[»] chr6 (3 HSPs)
chr6 (17-242)||(15952912-15953137)
chr6 (40-95)||(21182456-21182511)
chr6 (165-239)||(20758765-20758839)
[»] chr3 (1 HSPs)
chr3 (25-205)||(26362612-26362794)
[»] chr8 (3 HSPs)
chr8 (25-109)||(13274360-13274444)
chr8 (139-239)||(19385655-19385755)
chr8 (135-239)||(13274472-13274575)
[»] chr4 (3 HSPs)
chr4 (41-109)||(17538638-17538706)
chr4 (24-109)||(17539685-17539770)
chr4 (49-95)||(6686625-6686671)
[»] chr5 (1 HSPs)
chr5 (24-109)||(28151296-28151382)
[»] chr7 (1 HSPs)
chr7 (165-239)||(2435124-2435198)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 15953137 - 15952912
Alignment:
Q  17 atttaaattaatgagaatgatgaagagaggtgtcaaggaaacttatctttcttgattttgttgtagaattagatcaccgtcttgtgacaacttattatat 116  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  15953137 atttaaattaatgagaatgatcaagagaggtttcaaggaaacttatctttcttgattttgttgtagaattagatcaccatcttgtgacaacttatcatat 15953038  T
Q  117 tcattgtaacatcaatcgcaaaaactacaagacgaacaaacgatgaaaagtctaagacgcgctgatcacgctatccttaaggatttttcatgtgattaca 216  Q
    ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15953037 tcattgtaacatcaaccgcaaagattacaagacgaacaaacgatgaaaagtctaagacgcgctgatcacgctatccttaaggatttttcatgtgattaca 15952938  T
Q  217 cgttaatcccctaagatttaacaaac 242  Q
    ||||||||||||||||||||||||||    
T  15952937 cgttaatcccctaagatttaacaaac 15952912  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 21182456 - 21182511
Alignment:
Q  40 agagaggtgtcaaggaaacttatctttcttgattttgttgtagaattagatcaccg 95  Q
    |||||| | |||| ||||||||||||||||| | ||||||| ||||||||||||||    
T  21182456 agagagatttcaatgaaacttatctttcttggtattgttgtcgaattagatcaccg 21182511  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 20758765 - 20758839
Alignment:
Q  165 agtctaagacgcgctgatcacgctatccttaaggatttttcatgtgattacacgttaatcccctaagatttaaca 239  Q
    ||||| ||||| ||||||||| || |||||||| ||||| || ||| ||| ||| |||||||| |||||||||||    
T  20758765 agtctgagacgtgctgatcacactgtccttaagaattttccacgtgtttatacgctaatcccccaagatttaaca 20758839  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 26362794 - 26362612
Alignment:
Q  25 taatgagaatgatgaagagaggtgtcaaggaaacttatctttcttgattttgttgtagaattagatcaccgtcttgtgacaactt--attatattcattg 122  Q
    |||||||||| || ||||||| | | |||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||  || | | ||| ||    
T  26362794 taatgagaataatcaagagagattttaaggaaacttatctgtcttgattttgttgtagaattatatcactgtcttgagacaacttgaatcaaactcaatg 26362695  T
Q  123 taacatcaatcgcaaaaactacaagacgaacaaacgatgaaaagtctaagacgcgctgatcacgctatccttaaggatttttc 205  Q
    ||  ||||| |||||| |||||||||| ||||||||||||||| ||| ||| |  |||||| |  | ||||||||||||||||    
T  26362694 tagaatcaaccgcaaagactacaagacaaacaaacgatgaaaaatctgagatgtactgatcgcattgtccttaaggatttttc 26362612  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 13274360 - 13274444
Alignment:
Q  25 taatgagaatgatgaagagaggtgtcaaggaaacttatctttcttgattttgttgtagaattagatcaccgtcttgtgacaactt 109  Q
    |||||||||| || ||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||||||||  |||||||    
T  13274360 taatgagaataattaagagagatttcaaggaaacttatctgtcttgatcttgttgtagaattagatcaccgtcttggaacaactt 13274444  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 19385655 - 19385755
Alignment:
Q  139 aactacaagacgaacaaacgatgaaaagtctaagacgcgctgatcacgctatccttaaggatttttcatgtgattacacgttaatcccctaagatttaac 238  Q
    |||||||| |||||||||| ||||| ||||| ||||| ||||||| | |||||||| | ||||||||| || |||| ||| ||| |||| ||||||||||    
T  19385655 aactacaaaacgaacaaaccatgaatagtctgagacgtgctgatcgcactatccttcatgatttttcacgtaattatacgctaaccccccaagatttaac 19385754  T
Q  239 a 239  Q
    |    
T  19385755 a 19385755  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 13274472 - 13274575
Alignment:
Q  135 caaaaactacaagacgaacaaacgatgaaaagtctaagacgcgctgatcacgctatccttaaggatttttcatgtgattacacgttaatcccctaagatt 234  Q
    |||| |||||||||| |||||| ||||||| |||| ||||| ||||||| | || ||||||| |||||| |  || |||| |||||||||||||| |||     
T  13274472 caaagactacaagacaaacaaatgatgaaa-gtctgagacgtgctgatcgcactgtccttaaagattttccgcgtaattatacgttaatcccctaggata 13274570  T
Q  235 taaca 239  Q
    |||||    
T  13274571 taaca 13274575  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 17538706 - 17538638
Alignment:
Q  41 gagaggtgtcaaggaaacttatctttcttgattttgttgtagaattagatcaccgtcttgtgacaactt 109  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||    
T  17538706 gagaggtttcaaggaaacttatatgtcttgattttgttgtagaattagatcaccgtcttgggacaactt 17538638  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 17539770 - 17539685
Alignment:
Q  24 ttaatgagaatgatgaagagaggtgtcaaggaaacttatctttcttgattttgttgtagaattagatcaccgtcttgtgacaactt 109  Q
    ||||||| ||| || ||||||||| |||||||||||||||  |||||||||||||||||||||| |||||| ||||| ||||||||    
T  17539770 ttaatgataataatcaagagaggtttcaaggaaacttatcagtcttgattttgttgtagaattaaatcaccatcttgggacaactt 17539685  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 6686671 - 6686625
Alignment:
Q  49 tcaaggaaacttatctttcttgattttgttgtagaattagatcaccg 95  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  6686671 tcaaggaaacttatctgtcttgattttgttgtcgaattagatcaccg 6686625  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 28151296 - 28151382
Alignment:
Q  24 ttaatgagaatgatgaagagaggtgtcaaggaaacttatctttcttgattttgtt-gtagaattagatcaccgtcttgtgacaactt 109  Q
    ||||||||||| || ||||||||| |||||| ||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||    
T  28151296 ttaatgagaataatcaagagaggtttcaaggtaacttatatgtcttgattttgttggtagaattagatcaccgtcttgggacaactt 28151382  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 2435198 - 2435124
Alignment:
Q  165 agtctaagacgcgctgatcacgctatccttaaggatttttcatgtgattacacgttaatcccctaagatttaaca 239  Q
    ||||| ||||| ||||||| | || | ||||||||||||||  || |||| |||||||||||| |||||||||||    
T  2435198 agtcttagacgtgctgatcgcacttttcttaaggatttttcgcgtaattatacgttaatcccccaagatttaaca 2435124  T

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