View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1880_low_12 (Length: 221)
Name: NF1880_low_12
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1880_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 17135652 - 17135818
Alignment:
| Q |
33 |
ccacttgctgtaagattcctcctgattcaattaatcatttgttaaagtcagcatgggacacggaaacttgagatcgaaagtgtgtttggtgtacaacgat |
132 |
Q |
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| T |
17135652 |
ccacttgctgtaagattcctcctggttcaattaaccatttgttaaagtcagcatgggacacggaaacttgagatcgaaagtgtgtttggtgtccaacgat |
17135751 |
T |
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| Q |
133 |
tgtcggcgttggacaccgatatgtgtagtaatttatattcaagaactagtttgcttatatgtccaac |
199 |
Q |
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| T |
17135752 |
tgtcagcattggacaccgatatgtgcagtaatttatattcaagaactagtttgcttatatgtacaac |
17135818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 17348101 - 17347998
Alignment:
| Q |
90 |
acacggaaacttgagatcgaaagtgtgtttggtgtacaacgattgtcggcgttggacaccgatatgtgtagtaatttatattcaagaactagtttgctta |
189 |
Q |
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| T |
17348101 |
acacggaaacttgagatcgaaagtgtgtttggtgtctaacga------gcgttggacaccgatgtgtgtagtaatttatattcaagaactagtttgctta |
17348008 |
T |
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| Q |
190 |
tatgtccaac |
199 |
Q |
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| T |
17348007 |
tatgtacaac |
17347998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 17348219 - 17348162
Alignment:
| Q |
33 |
ccacttgctgtaagattcctcctgattcaattaatcatttgttaaagtcagcatggga |
90 |
Q |
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| T |
17348219 |
ccacttgctgtaagattcctcctggttcaattaaccatttgttaaagtcagcatggga |
17348162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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