View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1880_low_13 (Length: 205)

Name: NF1880_low_13
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1880_low_13
NF1880_low_13
[»] chr6 (18 HSPs)
chr6 (22-187)||(12210672-12210837)
chr6 (34-187)||(12163641-12163794)
chr6 (91-187)||(12163953-12164049)
chr6 (34-177)||(12163293-12163436)
chr6 (34-179)||(12163482-12163627)
chr6 (91-187)||(12164211-12164307)
chr6 (90-177)||(12163289-12163376)
chr6 (43-140)||(12163362-12163459)
chr6 (30-117)||(12163190-12163277)
chr6 (46-185)||(12163335-12163474)
chr6 (103-185)||(12163203-12163285)
chr6 (109-176)||(12179161-12179231)
chr6 (109-176)||(12164328-12164395)
chr6 (109-143)||(12192329-12192363)
chr6 (49-117)||(12163971-12164039)
chr6 (49-117)||(12164229-12164297)
chr6 (109-153)||(12210858-12210902)
chr6 (109-187)||(12211017-12211092)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 12210672 - 12210837
Alignment:
Q  22 aagaaggaatacaaatacccttctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagttt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  12210672 aagaaggaatacaaatacccttctcctccaccaccagtatacaagtacaaatcacctcctccaccggtatataagtatcaatctcccccaccaccagttt 12210771  T
Q  122 acaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaac 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12210772 acaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaac 12210837  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 12163641 - 12163794
Alignment:
Q  34 aaatacccttctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagtttacaagtacaagt 133  Q
    |||||||| ||||| ||||||||||| ||||||||||||||| ||||||| || || || |||||| ||||||| |||||||||||||||||||| ||||    
T  12163641 aaatacccatctcccccaccaccagtttacaagtacaaatcacctcctcctccagtttacaagtataaatctcctccaccaccagtttacaagtataagt 12163740  T
Q  134 cacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaac 187  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12163741 cacctcctcccccagtttacaagtacaaatctccaccaccaccacccaagaaac 12163794  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 12163953 - 12164049
Alignment:
Q  91 tataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaac 187  Q
    |||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12163953 tataagtacccatcaccaccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccaccaccaccacccaagaaac 12164049  T

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Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 12163293 - 12163436
Alignment:
Q  34 aaatacccttctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagtttacaagtacaagt 133  Q
    ||||| || ||||| ||||||||||| ||||||||||| ||| |||||||||| || || |||||| ||||||| ||||||||||||||||||||||| |    
T  12163293 aaatatccatctccaccaccaccagtttacaagtacaagtcacctcctccaccagtttacaagtataaatctcctccaccaccagtttacaagtacaaat 12163392  T
Q  134 cacctcctcccccagtttacaagtacaaatctccacccccacca 177  Q
    |||||||||| || || |||||||| ||||| || || ||||||    
T  12163393 cacctcctccaccggtgtacaagtataaatcccctcctccacca 12163436  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 12163482 - 12163627
Alignment:
Q  34 aaatacccttctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagtttacaagtacaagt 133  Q
    |||||||| ||||| ||||| ||||| ||||||||||||||| |||| ||||| || || |||||  ||||||| |||||||||||||||||||| || |    
T  12163482 aaatacccatctccaccaccgccagtttacaagtacaaatcacctccaccaccggtgtacaagtacaaatctcctccaccaccagtttacaagtataaat 12163581  T
Q  134 cacctcctcccccagtttacaagtacaaatctccacccccaccacc 179  Q
    | |||||||| ||||| ||||||||||| ||||| || ||||||||    
T  12163582 cccctcctccaccagtgtacaagtacaagtctcctccaccaccacc 12163627  T

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Target: chr6; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 12164211 - 12164307
Alignment:
Q  91 tataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaac 187  Q
    |||||||| | ||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  12164211 tataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccaccacccaagaaac 12164307  T

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Target: chr6; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 12163289 - 12163376
Alignment:
Q  90 atataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccacca 177  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||    
T  12163289 atataaatatccatctccaccaccaccagtttacaagtacaagtcacctcctccaccagtttacaagtataaatctcctccaccacca 12163376  T

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Target: chr6; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 12163362 - 12163459
Alignment:
Q  43 tctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcc 140  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| || || |||||| |||| || || |||||||| |||||||||||||| |||||    
T  12163362 tctcctccaccaccagtttacaagtacaaatcacctcctccaccggtgtacaagtataaatcccctcctccaccagtgtacaagtacaagtctcctcc 12163459  T

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Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 12163190 - 12163277
Alignment:
Q  30 atacaaatacccttctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccacca 117  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||| || ||||||||| | ||||| || ||||||    
T  12163190 atacaaatacgcttctcctccacctccagtttacaagtacaaatcacctcctccaccagtgtataagtataagtctcctcctccacca 12163277  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 12163335 - 12163474
Alignment:
Q  46 cctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccc 145  Q
    ||||| |||||||| |||||||| |||||  |||| ||||| || || |||||  |||| || || ||||| || |||||||| || || |||||||| |    
T  12163335 cctcctccaccagtttacaagtataaatctcctccaccaccagtttacaagtacaaatcacctcctccaccggtgtacaagtataaatcccctcctccac 12163434  T
Q  146 cagtttacaagtacaaatctccacccccaccacccaagaa 185  Q
    |||| ||||||||||| ||||| || |||||||| |||||    
T  12163435 cagtgtacaagtacaagtctcctccaccaccacctaagaa 12163474  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 12163203 - 12163285
Alignment:
Q  103 tctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaa 185  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| ||||| || ||||| || ||||| || |||||||| |||||    
T  12163203 tctcctccacctccagtttacaagtacaaatcacctcctccaccagtgtataagtataagtctcctcctccaccaccgaagaa 12163285  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 12179161 - 12179231
Alignment:
Q  109 ccaccaccagtttacaagtacaagt---cacctcctcccccagtttacaagtacaaatctccacccccacc 176  Q
    |||||||||||||||||||||||||   ||||||| || ||||||||||||||||| || ||||| |||||    
T  12179161 ccaccaccagtttacaagtacaagtccccacctccaccaccagtttacaagtacaagtccccacctccacc 12179231  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 12164328 - 12164395
Alignment:
Q  109 ccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccacc 176  Q
    |||||||| |||||||| || ||||| |||||||| |||||||||||||| |||||||| || |||||    
T  12164328 ccaccacccgtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccacc 12164395  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 12192329 - 12192363
Alignment:
Q  109 ccaccaccagtttacaagtacaagtcacctcctcc 143  Q
    ||||||||||||||||||||||||||||| |||||    
T  12192329 ccaccaccagtttacaagtacaagtcaccccctcc 12192363  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 12163971 - 12164039
Alignment:
Q  49 ccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccacca 117  Q
    ||||||||||| ||||||||||| ||| ||||||| || || || |||||  ||||||| |||||||||    
T  12163971 ccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccaccaccacca 12164039  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 12164229 - 12164297
Alignment:
Q  49 ccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccacca 117  Q
    ||||| ||||| ||||||||||||||| ||||||| || || || |||||  ||||||| |||||||||    
T  12164229 ccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccacca 12164297  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 12210858 - 12210902
Alignment:
Q  109 ccaccaccagtttacaagtacaagtcacctcctcccccagtttac 153  Q
    |||||||||||||||||||| ||||| |||||||| || ||||||    
T  12210858 ccaccaccagtttacaagtataagtctcctcctccacctgtttac 12210902  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 12211017 - 12211092
Alignment:
Q  109 ccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaac 187  Q
    ||||||||||| |||||||| |||||||||||||| ||   ||||||||||  |||||| || ||||| || |||||||    
T  12211017 ccaccaccagtctacaagtataagtcacctcctcctcc---ttacaagtactcatctccccctccacctccaaagaaac 12211092  T

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