View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1880_low_4 (Length: 500)

Name: NF1880_low_4
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1880_low_4
NF1880_low_4
[»] chr2 (9 HSPs)
chr2 (11-500)||(37449181-37449661)
chr2 (238-353)||(10605434-10605549)
chr2 (234-296)||(31790471-31790533)
chr2 (238-331)||(35928284-35928376)
chr2 (268-348)||(28811274-28811354)
chr2 (226-293)||(11530035-11530102)
chr2 (260-294)||(36300422-36300456)
chr2 (236-280)||(12749980-12750024)
chr2 (235-311)||(42616711-42616787)
[»] chr4 (13 HSPs)
chr4 (233-304)||(34581592-34581663)
chr4 (260-346)||(39032495-39032581)
chr4 (226-347)||(30617203-30617323)
chr4 (238-354)||(3301553-3301669)
chr4 (225-279)||(2843583-2843637)
chr4 (232-338)||(38596730-38596832)
chr4 (226-304)||(13298535-13298613)
chr4 (260-338)||(21732959-21733037)
chr4 (307-347)||(1046655-1046695)
chr4 (240-288)||(18968295-18968343)
chr4 (261-345)||(25402881-25402965)
chr4 (224-280)||(48244443-48244499)
chr4 (266-338)||(48724410-48724482)
[»] chr6 (18 HSPs)
chr6 (226-355)||(33067938-33068061)
chr6 (234-283)||(31694720-31694769)
chr6 (226-289)||(26373089-26373152)
chr6 (226-303)||(1912484-1912561)
chr6 (235-304)||(9074113-9074182)
chr6 (236-280)||(21869879-21869923)
chr6 (260-339)||(431021-431100)
chr6 (235-314)||(7939890-7939969)
chr6 (319-354)||(31696629-31696664)
chr6 (260-339)||(33532433-33532512)
chr6 (238-296)||(1356891-1356949)
chr6 (226-296)||(2732942-2733012)
chr6 (225-339)||(3784881-3784994)
chr6 (234-296)||(14933137-14933199)
chr6 (226-339)||(29243034-29243147)
chr6 (260-304)||(9075212-9075256)
chr6 (226-282)||(9163762-9163818)
chr6 (236-276)||(31322662-31322702)
[»] chr3 (11 HSPs)
chr3 (232-331)||(24830149-24830248)
chr3 (235-304)||(43307604-43307673)
chr3 (286-354)||(10275754-10275822)
chr3 (261-296)||(8788959-8788994)
chr3 (233-280)||(54842197-54842244)
chr3 (235-345)||(5033346-5033456)
chr3 (227-280)||(21754245-21754298)
chr3 (235-344)||(21011305-21011410)
chr3 (251-339)||(34363254-34363342)
chr3 (260-304)||(38884053-38884097)
chr3 (260-304)||(54838622-54838666)
[»] scaffold0913 (1 HSPs)
scaffold0913 (226-287)||(1272-1333)
[»] scaffold0898 (1 HSPs)
scaffold0898 (226-287)||(4268-4329)
[»] chr7 (8 HSPs)
chr7 (226-339)||(25313972-25314085)
chr7 (232-287)||(30900106-30900161)
chr7 (234-354)||(21451448-21451571)
chr7 (262-347)||(23117293-23117378)
chr7 (235-288)||(30477952-30478005)
chr7 (236-289)||(38622871-38622924)
chr7 (224-288)||(7245942-7246006)
chr7 (260-304)||(10455102-10455146)
[»] chr5 (12 HSPs)
chr5 (233-301)||(40990970-40991038)
chr5 (229-280)||(38346871-38346922)
chr5 (235-305)||(875711-875780)
chr5 (310-354)||(2643960-2644004)
chr5 (246-286)||(4787938-4787978)
chr5 (260-347)||(40877060-40877145)
chr5 (260-339)||(40213831-40213910)
chr5 (264-342)||(5987329-5987407)
chr5 (325-354)||(34101509-34101538)
chr5 (319-347)||(21780927-21780955)
chr5 (234-354)||(22214924-22215044)
chr5 (236-280)||(41399571-41399615)
[»] chr8 (8 HSPs)
chr8 (233-304)||(27483064-27483135)
chr8 (234-338)||(32187238-32187341)
chr8 (232-338)||(16690915-16691021)
chr8 (270-339)||(11501489-11501558)
chr8 (241-286)||(22807100-22807145)
chr8 (260-336)||(14732208-14732284)
chr8 (260-292)||(36145326-36145358)
chr8 (233-293)||(39550955-39551015)
[»] chr1 (2 HSPs)
chr1 (260-304)||(6025947-6025991)
chr1 (260-336)||(37129139-37129215)


Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Original strand, 37449181 - 37449661
Alignment:
Q  11 atgaaacatgatcatgtgccaacagacatactgtttatacatgtgtatttgataatcttacctggcactattaccatcagagttcaataagtattattct 110  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37449181 atgaaacatgatcacgtgccaacagacatactgtttatacatgtgtatttgataatcttacctggcactattaccatcagagttcaataagtattattct 37449280  T
Q  111 gcagtaaatgcttgtagtctggcacagtaaattaaacataaaaatcaatcttgcaaaaaatttcattttataaagtataagacccagttttgtcaaatag 210  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  37449281 gcagtaaatgcttgtagtctggcacattaaattaaacataaaaatcaatcttgcaaaaaatttcattttataaactataagacccagttttgtcagatag 37449380  T
Q  211 aggcgctatagcgtaaacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcg 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||    
T  37449381 aggcgctatagcgtaaacaagtcgctattgttctatgatacactatctcgtacaaaatgttgtcaa---------atagtggcgctttagcactctagcg 37449471  T
Q  311 tagcatagtttgaacaaactgctattttctgcaatccacgattgcttttaattattcaacatattaatttttcattgtctaaggtcccctttaatttaac 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37449472 tagcatagtttgaacaaactgctattttctgcaatccacgattgcttttaattatttaacatattaatttttcattgtctaaggtcccctttaatttaac 37449571  T
Q  411 atatagataaacttgcattgcatgtatttacagatatgctcaacttatcaatcaagctatgttcttcagtcttgcatacattatccttac 500  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37449572 atatagatagacttgcattgcatgtatttacagatatgctcaacttatcaatcaagctatgttcttcagtcttgcatacattatccttac 37449661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 10605549 - 10605434
Alignment:
Q  238 ttgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattt 337  Q
    ||||||||||||||||||| |  |||||||| |||||||||||||||||||  || | | |||||||   || ||||| | | |||||| || ||| |||    
T  10605549 ttgttctgtgatacactatttaatacaaaatcttgtcaaatagtggctatatcggtgttatagcactggtgcatagcagaatctgaacagaccgctgttt 10605450  T
Q  338 tctgcaatccacgatt 353  Q
    ||||||||| ||||||    
T  10605449 tctgcaatctacgatt 10605434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 31790533 - 31790471
Alignment:
Q  234 gctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgct 296  Q
    ||||||||||||  ||||||||| | ||| |||||||||||| ||||||| ||||||||||||    
T  31790533 gctattgttctgccatacactatttagtataaaatgttgtcatatagtggatatagtggcgct 31790471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 35928284 - 35928376
Alignment:
Q  238 ttgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactg 331  Q
    |||||| |||||||||| |   |||||||||||||||||||||| ||||||| |||||  ||||| | | || ||||||| |||||||||||||    
T  35928284 ttgttccgtgatacactgttgagtacaaaatgttgtcaaatagt-gctatagcggcgcggtagcattgttgcatagcataatttgaacaaactg 35928376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 28811274 - 28811354
Alignment:
Q  268 tgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttctgcaatcca 348  Q
    ||||||||||||| ||||||||||| ||| ||||||| |||| ||||  | || ||| ||||||  |||||||||||||||    
T  28811274 tgttgtcaaatagcggctatagtggtgctatagcactgtagcatagcgaaattggaagaaactgtgattttctgcaatcca 28811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 11530035 - 11530102
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggc 293  Q
    ||||| || ||||||||||| |||||||||| | ||||| ||| |||| |||||| ||||||||||||    
T  11530035 aacaaatcactattgttctgcgatacactatttagtacataatattgtgaaatagcggctatagtggc 11530102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 36300422 - 36300456
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcg 294  Q
    |||||||||||||||||||||||| ||||||||||    
T  36300422 gtacaaaatgttgtcaaatagtggatatagtggcg 36300456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 12749980 - 12750024
Alignment:
Q  236 tattgttctgtgatacactatctcgtacaaaatgttgtcaaatag 280  Q
    |||||||||||  |||||||| | |||||||||||||||||||||    
T  12749980 tattgttctgtattacactatttagtacaaaatgttgtcaaatag 12750024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 42616787 - 42616711
Alignment:
Q  235 ctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgt 311  Q
    |||||||| || ||| |||||| | ||||||| |||||||||||||  | ||||||||| || ||||||| ||||||    
T  42616787 ctattgttttgcgatccactatttagtacaaagtgttgtcaaatagcagttatagtggcactatagcactatagcgt 42616711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 34581592 - 34581663
Alignment:
Q  233 cgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcact 304  Q
    ||||||||||| ||||||| |||| | ||||||||||||||||||||| ||||||||| ||||| |||||||    
T  34581592 cgctattgttccgtgatacgctatttagtacaaaatgttgtcaaatagcggctatagtagcgctatagcact 34581663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 260 - 346
Target Start/End: Complemental strand, 39032581 - 39032495
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttctgcaatc 346  Q
    ||||||||||||||| |||| |||||| || |||||| ||||||| | |||||||| | ||| ||||||||| ||||||| ||||||    
T  39032581 gtacaaaatgttgtcgaataatggctacaggggcgctatagcactattgcgtagcagaatttcaacaaactgttattttccgcaatc 39032495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 347
Target Start/End: Complemental strand, 30617323 - 30617203
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaac 325  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||| |||| |||||||||| |||| |  ||| ||||| | | ||||||   | |||||||    
T  30617323 aacaaatcgctagtgttctgtgatacgctat-tagtacaaaatattgtgaaatagtggcaatagcgatgctatagcattgttgcgtagtggaatttgaac 30617225  T
Q  326 aaactgctattttctgcaatcc 347  Q
    |||| |||||||||||||||||    
T  30617224 aaaccgctattttctgcaatcc 30617203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 354
Target Start/End: Complemental strand, 3301669 - 3301553
Alignment:
Q  238 ttgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattt 337  Q
    ||||| || ||||| |||| | |||||| || |||| ||||||  ||||||||| |||| ||||||| ||||| ||   | |||||||||| ||||||||    
T  3301669 ttgttttgcgatactctatttagtacaatattttgttaaatagcagctatagtgacgctatagcactgtagcgcagtggaatttgaacaaagtgctattt 3301570  T
Q  338 tctgcaatccacgattg 354  Q
    |||||||| ||||||||    
T  3301569 tctgcaattcacgattg 3301553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 2843637 - 2843583
Alignment:
Q  225 aaacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaata 279  Q
    |||||| || ||||||||||| |||||||||| | ||||||||||||||||||||    
T  2843637 aaacaaatcactattgttctgcgatacactatttagtacaaaatgttgtcaaata 2843583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 38596730 - 38596832
Alignment:
Q  232 tcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactg 331  Q
    |||||| |||| || ||||||||||   ||||||||| |||| |||||||| ||||||  ||||| ||||||| || ||||||| | |||||||||||||    
T  38596730 tcgctactgttttgcgatacactattcagtacaaaatattgt-aaatagtg-ctatag--gcgctatagcactgtaacgtagcagaatttgaacaaactg 38596825  T
Q  332 ctatttt 338  Q
    |||||||    
T  38596826 ctatttt 38596832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 13298535 - 13298613
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcact 304  Q
    ||||| || ||||||||||||||||  |||| | ||||||| || |||||||||||| ||||| |||| || |||||||    
T  13298535 aacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaatagtgactataatggcactatagcact 13298613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 21733037 - 21732959
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctatttt 338  Q
    ||||||| ||||||||||| |||| | |||||||||| || ||| ||||| ||||  || | |||||||||||||||||    
T  21733037 gtacaaagtgttgtcaaatggtggatctagtggcgctataacacactagcatagctcagatagaacaaactgctatttt 21732959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 1046655 - 1046695
Alignment:
Q  307 agcgtagcatagtttgaacaaactgctattttctgcaatcc 347  Q
    ||||||||| | ||||||||||||| |||||||||||||||    
T  1046655 agcgtagcagaatttgaacaaactgttattttctgcaatcc 1046695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 18968295 - 18968343
Alignment:
Q  240 gttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctata 288  Q
    |||||| | |||||||| | ||||||||||||||||||||| |||||||    
T  18968295 gttctgagttacactatttagtacaaaatgttgtcaaatagcggctata 18968343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 25402881 - 25402965
Alignment:
Q  261 tacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttctgcaat 345  Q
    ||||||||||||||||||||  | ||||| || | | |||||||||  ||||||| | |||||| ||||| ||||||||| ||||    
T  25402881 tacaaaatgttgtcaaatagcagttatagcggtgatatagcactcttacgtagcagaatttgaataaacttctattttctacaat 25402965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 48244499 - 48244443
Alignment:
Q  224 taaacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatag 280  Q
    ||||||| |||||||||||||| |||||||| | | |||||  ||||||||||||||    
T  48244499 taaacaaatcgctattgttctgcgatacactgtttagtacagtatgttgtcaaatag 48244443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 48724482 - 48724410
Alignment:
Q  266 aatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctatttt 338  Q
    ||||||||||||||||| ||||| ||| ||| |||||||  || |||||| | |||| |||||| ||||||||    
T  48724482 aatgttgtcaaatagtgactataatggtgctatagcactgcagtgtagcagaatttggacaaacagctatttt 48724410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 355
Target Start/End: Complemental strand, 33068061 - 33067938
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaac 325  Q
    ||||| ||||||||||||||||||| |||||   ||||||||||||||||||||| |||  ||||   | | ||||||| | |||||| ||| |||||||    
T  33068061 aacaaatcgctattgttctgtgataaactat---gtacaaaatgttgtcaaatagcggcattagt---gttatagcactgttgcgtagaataatttgaac 33067968  T
Q  326 aaactgctattttctgcaatccacgattgc 355  Q
    ||||||||||||| ||| | || |||||||    
T  33067967 aaactgctattttttgcgacccgcgattgc 33067938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 31694769 - 31694720
Alignment:
Q  234 gctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtgg 283  Q
    ||||||||||||||||||||||| | |||||||||||| |||||||||||    
T  31694769 gctattgttctgtgatacactatttagtacaaaatgttttcaaatagtgg 31694720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 26373089 - 26373152
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatag 289  Q
    ||||| || ||||||||||||||||| |||| | ||||||| |||||||||||||||| |||||    
T  26373089 aacaactcactattgttctgtgatacgctatttagtacaaagtgttgtcaaatagtggttatag 26373152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 1912561 - 1912484
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcac 303  Q
    ||||| |||||||||||||| |||| ||||| | ||||||| | ||||||||||| | |||||||| |||| ||||||    
T  1912561 aacaaatcgctattgttctgcgatatactatttagtacaaattattgtcaaatagcgactatagtgacgctatagcac 1912484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 9074182 - 9074113
Alignment:
Q  235 ctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcact 304  Q
    |||||||| || |||||||||| |  ||||||||||| |||||||| |||||||| |||||| |||||||    
T  9074182 ctattgttttgcgatacactatttactacaaaatgttatcaaatagaggctatagcggcgctatagcact 9074113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 21869879 - 21869923
Alignment:
Q  236 tattgttctgtgatacactatctcgtacaaaatgttgtcaaatag 280  Q
    |||||||| |||||||||||| | |||||||||||||||||||||    
T  21869879 tattgttccgtgatacactatttagtacaaaatgttgtcaaatag 21869923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 431021 - 431100
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttc 339  Q
    ||||||||| |||| |||||| ||||||||  ||||| ||||||| | |||||||| | ||||||  |||||||||||||    
T  431021 gtacaaaatattgttaaatagcggctatagatgcgctatagcactgttgcgtagcagaatttgaatgaactgctattttc 431100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 7939890 - 7939969
Alignment:
Q  235 ctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagc 314  Q
    ||||||||||| ||||| ||||   ||||||| || |||||||||| |||||||||||| || ||||||| |||| ||||    
T  7939890 ctattgttctgagatactctattcagtacaaagtgatgtcaaatagcggctatagtggctctatagcactgtagcatagc 7939969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Complemental strand, 31696664 - 31696629
Alignment:
Q  319 tttgaacaaactgctattttctgcaatccacgattg 354  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31696664 tttgaacaaaccgctattttctgcaatccacgattg 31696629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 33532512 - 33532433
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttc 339  Q
    ||||| |||||||||||| ||  |||||||| ||||| ||||||| | | |||||| | ||||||||||| |||||||||    
T  33532512 gtacagaatgttgtcaaacagcagctatagttgcgctatagcactgttgagtagcagaatttgaacaaaccgctattttc 33532433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 1356949 - 1356891
Alignment:
Q  238 ttgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgct 296  Q
    |||||||| ||||| || | | |||||||||||||| |||||||| |||||||||||||    
T  1356949 ttgttctgcgatacgctgtttagtacaaaatgttgttaaatagtgactatagtggcgct 1356891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 2732942 - 2733012
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgct 296  Q
    ||||| ||||||||||| || ||||  |||| | |||||||||||||||||||||  ||||||| ||||||    
T  2732942 aacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctatagaggcgct 2733012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 339
Target Start/End: Complemental strand, 3784994 - 3784881
Alignment:
Q  225 aaacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaa 324  Q
    |||||| || ||||||||| ||||||  | || | ||||||||  |||||||| || |||||||| |||||| ||||||| | || ||||  ||||||||    
T  3784994 aaacaaatcactattgttccgtgatatgcaatttggtacaaaacattgtcaaacagaggctatagcggcgctctagcactgttgcatagcg-agtttgaa 3784896  T
Q  325 caaactgctattttc 339  Q
    |||| ||||||||||    
T  3784895 caaattgctattttc 3784881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 14933137 - 14933199
Alignment:
Q  234 gctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgct 296  Q
    |||||||||||| |||||||| | | ||||||| |||||||| |||| || ||||||||||||    
T  14933137 gctattgttctgcgatacactctttagtacaaattgttgtcagatagcggatatagtggcgct 14933199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 339
Target Start/End: Complemental strand, 29243147 - 29243034
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaac 325  Q
    ||||| || ||||||||||| |||||||||| |  || ||||| | ||||||| | ||||||||||||||| ||||| | | | || ||  | ||||| |    
T  29243147 aacaattctctattgttctgggatacactatttaatataaaatctagtcaaattgcggctatagtggcgctatagcattgttgtgtggcggaatttgacc 29243048  T
Q  326 aaactgctattttc 339  Q
    ||||||||||||||    
T  29243047 aaactgctattttc 29243034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 9075212 - 9075256
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcact 304  Q
    ||||||||||||||||||||| || ||||| |||||| |||||||    
T  9075212 gtacaaaatgttgtcaaatagaggttatagcggcgctatagcact 9075256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 9163762 - 9163818
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtg 282  Q
    ||||| || ||||||||| || |||| |||| | |||||||||||||||||||||||    
T  9163762 aacaaatccctattgttccgttatacgctatttagtacaaaatgttgtcaaatagtg 9163818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 31322662 - 31322702
Alignment:
Q  236 tattgttctgtgatacactatctcgtacaaaatgttgtcaa 276  Q
    |||| |||||||||||||||| || ||||||||||||||||    
T  31322662 tattattctgtgatacactatttcttacaaaatgttgtcaa 31322702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 331
Target Start/End: Original strand, 24830149 - 24830248
Alignment:
Q  232 tcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactg 331  Q
    |||||||||||||   ||||||||| | ||| ||||||||||||||||  |||||||  |||||| ||||||||| | |||||| | |||||||||||||    
T  24830149 tcgctattgttctacaatacactatttagtataaaatgttgtcaaataaaggctatatcggcgctatagcactcttgtgtagcaaaatttgaacaaactg 24830248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 43307673 - 43307604
Alignment:
Q  235 ctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcact 304  Q
    |||||||| |||||||| || | | |||||||||||||| | ||||||| |||||||||||| |||||||    
T  43307673 ctattgttttgtgatacgctgtttagtacaaaatgttgttagatagtggttatagtggcgctatagcact 43307604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 10275822 - 10275754
Alignment:
Q  286 atagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttctgcaatccacgattg 354  Q
    ||||||||| | || |||| ||| ||||| || |||||||||| |||||||||||||||||| ||||||    
T  10275822 atagtggcgttataacactgtagtgtagcgtaatttgaacaaattgctattttctgcaatccgcgattg 10275754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 8788994 - 8788959
Alignment:
Q  261 tacaaaatgttgtcaaatagtggctatagtggcgct 296  Q
    |||||||||||||||||||| |||||||||||||||    
T  8788994 tacaaaatgttgtcaaatagaggctatagtggcgct 8788959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 54842244 - 54842197
Alignment:
Q  233 cgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatag 280  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||||||    
T  54842244 cgctattgttctgtgatacgctatttagtataaaatgttgtcaaatag 54842197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 345
Target Start/End: Original strand, 5033346 - 5033456
Alignment:
Q  235 ctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgcta 334  Q
    ||||||||| |||||||||||| | ||||| ||| | || |||| |  | |||||||||||| ||||  | | |||||||  | ||||||||||||||||    
T  5033346 ctattgttccgtgatacactatttagtacataatatcgtgaaattgcagttatagtggcgctatagctgtgttgcgtagcggaatttgaacaaactgcta 5033445  T
Q  335 ttttctgcaat 345  Q
    ||||| |||||    
T  5033446 ttttccgcaat 5033456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 21754245 - 21754298
Alignment:
Q  227 acaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatag 280  Q
    |||| |||||||||||| | |||||||||| | ||||||| |||||||||||||    
T  21754245 acaaatcgctattgttccgcgatacactatttagtacaaattgttgtcaaatag 21754298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 344
Target Start/End: Original strand, 21011305 - 21011410
Alignment:
Q  235 ctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgcta 334  Q
    ||||||||||  |||| ||||| | |||||||  |||||||||||  ||||||||    ||| ||||||| | | |||||| ||||||||||||| ||||    
T  21011305 ctattgttctacgataaactatgtagtacaaatggttgtcaaataacggctatag----gctatagcactatcgtgtagcagagtttgaacaaaccgcta 21011400  T
Q  335 ttttctgcaa 344  Q
    ||||| ||||    
T  21011401 ttttccgcaa 21011410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 34363254 - 34363342
Alignment:
Q  251 cactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttc 339  Q
    |||||| | |||||||||||||||||||||  ||| || ||||||| |||||||   | |||||| | ||| ||||| |||||||||||    
T  34363254 cactatttagtacaaaatgttgtcaaatagccgctgtaatggcgctgtagcactactgtgtagcagatttttaacaatctgctattttc 34363342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 38884097 - 38884053
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcact 304  Q
    ||||||||| |||||||||||||| |||||||| ||| |||||||    
T  38884097 gtacaaaatattgtcaaatagtgggtatagtggtgctatagcact 38884053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 54838622 - 54838666
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcact 304  Q
    ||||||||||||||||||||||||||| | || |||| |||||||    
T  54838622 gtacaaaatgttgtcaaatagtggctaaaatgccgctatagcact 54838666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 1333 - 1272
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctat 287  Q
    ||||||||| |||||||| |||||||||||| | ||||||| ||||||||||||| ||||||    
T  1333 aacaagtcgatattgttccgtgatacactatttagtacaaagtgttgtcaaatagaggctat 1272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 4268 - 4329
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctat 287  Q
    ||||||||| |||||||| |||||||||||| | ||||||| ||||||||||||| ||||||    
T  4268 aacaagtcgatattgttccgtgatacactatttagtacaaagtgttgtcaaatagaggctat 4329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 339
Target Start/End: Complemental strand, 25314085 - 25313972
Alignment:
Q  226 aacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaac 325  Q
    ||||| ||| ||||||||||||||||||||| | ||||||| |||||| ||||| | || ||||  ||||| || |||| ||||||||   | |||||||    
T  25314085 aacaaatcgttattgttctgtgatacactatttggtacaaagtgttgttaaataatcgcaatagcagcgctatatcactttagcgtagatgaatttgaac 25313986  T
Q  326 aaactgctattttc 339  Q
    ||||| ||||||||    
T  25313985 aaacttctattttc 25313972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 30900161 - 30900106
Alignment:
Q  232 tcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctat 287  Q
    |||||||||||| | |||||||||| | ||||||||| |||| |||||||||||||    
T  30900161 tcgctattgttcagcgatacactatttagtacaaaatattgtgaaatagtggctat 30900106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 354
Target Start/End: Complemental strand, 21451571 - 21451448
Alignment:
Q  234 gctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctata---gtggcgctttagcactctagcgtagcatagtttgaacaaact 330  Q
    |||||||||||| ||||| | || | ||||||||| ||||||||||| |||||||   |||||| | |||||||  || |||||  | |||||||  | |    
T  21451571 gctattgttctgcgatacgcaatttagtacaaaatcttgtcaaatagcggctataattgtggcgttatagcactgcagtgtagcgaaatttgaacggaat 21451472  T
Q  331 gctattttctgcaatccacgattg 354  Q
    |||||||||||| |||| ||||||    
T  21451471 gctattttctgcgatccgcgattg 21451448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 347
Target Start/End: Complemental strand, 23117378 - 23117293
Alignment:
Q  262 acaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttctgcaatcc 347  Q
    |||||||||||| ||||||||| |||||  ||||| ||||||| |  ||||||  | |||||||||||  |||||||| |||||||    
T  23117378 acaaaatgttgtgaaatagtgggtatagcagcgctatagcactgtcacgtagcggaatttgaacaaaccactattttccgcaatcc 23117293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 30477952 - 30478005
Alignment:
Q  235 ctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctata 288  Q
    ||||||||||| ||| || ||| | ||||||| |||||||||||||||||||||    
T  30477952 ctattgttctgcgatgcattattttgtacaaagtgttgtcaaatagtggctata 30478005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 38622924 - 38622871
Alignment:
Q  236 tattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatag 289  Q
    ||||||||  ||||||||||| | | ||||||||||||||||||| ||||||||    
T  38622924 tattgttccatgatacactatttagcacaaaatgttgtcaaatagcggctatag 38622871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 7246006 - 7245942
Alignment:
Q  224 taaacaagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctata 288  Q
    ||||||| |||||||| || || ||||| |||| | ||||||| ||||||||||||| |||||||    
T  7246006 taaacaaatcgctattcttttgcgatacgctatttagtacaaagtgttgtcaaatagcggctata 7245942  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 10455102 - 10455146
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcact 304  Q
    ||||||||| ||||||||| | ||||||||||||||| |||||||    
T  10455102 gtacaaaattttgtcaaattgcggctatagtggcgctatagcact 10455146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 40990970 - 40991038
Alignment:
Q  233 cgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagc 301  Q
    ||||||| |||||||| || |||| | |||||||||||||||||||||||| |||||||| ||| ||||    
T  40990970 cgctattcttctgtgacacgctatttagtacaaaatgttgtcaaatagtgggtatagtggtgctatagc 40991038  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 38346871 - 38346922
Alignment:
Q  229 aagtcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatag 280  Q
    ||||| |||||||||||||||||||||| |  ||||||||||||||||||||    
T  38346871 aagtcactattgttctgtgatacactatttactacaaaatgttgtcaaatag 38346922  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 875711 - 875780
Alignment:
Q  235 ctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactc 305  Q
    ||||||||| |||||||||||| | || |||||||||||||||||| ||||||||||| | | ||||||||    
T  875711 ctattgttccgtgatacactatttagt-caaaatgttgtcaaatagcggctatagtggtgttatagcactc 875780  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 2643960 - 2644004
Alignment:
Q  310 gtagcatagtttgaacaaactgctattttctgcaatccacgattg 354  Q
    |||||| | ||||||||||||||||||| ||||||||||||||||    
T  2643960 gtagcagaatttgaacaaactgctatttactgcaatccacgattg 2644004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 4787938 - 4787978
Alignment:
Q  246 tgatacactatctcgtacaaaatgttgtcaaatagtggcta 286  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  4787938 tgatacactatttagtacaaaatgttgtcaaatagtggcta 4787978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 347
Target Start/End: Complemental strand, 40877145 - 40877060
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttctgcaatcc 347  Q
    ||||||| |||||| |||||||||||||||  | | | ||||||| ||||  |||| | |||||||||||| ||||||||||||||||    
T  40877145 gtacaaagtgttgttaaatagtggctatag--gagttatagcactatagcaaagcagaatttgaacaaactactattttctgcaatcc 40877060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 40213910 - 40213831
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttc 339  Q
    ||||||||||||||||||| || |||||| ||| ||| ||||||| | |||||||| | ||| |||||||  ||||||||    
T  40213910 gtacaaaatgttgtcaaatggtagctatattggtgctatagcactgttgcgtagcaaaatttaaacaaaccactattttc 40213831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 5987329 - 5987407
Alignment:
Q  264 aaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttctgc 342  Q
    ||||||||||||| |||||||||||| |||||| ||||||| | || ||    | ||||| ||||||||||||||||||    
T  5987329 aaaatgttgtcaagtagtggctatagcggcgctatagcactattgcataatggaatttgatcaaactgctattttctgc 5987407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 34101538 - 34101509
Alignment:
Q  325 caaactgctattttctgcaatccacgattg 354  Q
    ||||||||||||||||||||||||||||||    
T  34101538 caaactgctattttctgcaatccacgattg 34101509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 21780927 - 21780955
Alignment:
Q  319 tttgaacaaactgctattttctgcaatcc 347  Q
    |||||||||||||||||||||||||||||    
T  21780927 tttgaacaaactgctattttctgcaatcc 21780955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 354
Target Start/End: Original strand, 22214924 - 22215044
Alignment:
Q  234 gctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgct 333  Q
    ||||||||||||  |||||||||   |||||||||||||||||||||  || ||||| | | | ||||||| | |||||||  | ||| ||||| | |||    
T  22214924 gctattgttctgcaatacactattcagtacaaaatgttgtcaaatagctgcaatagtagagttatagcactattgcgtagcggaattttaacaatccgct 22215023  T
Q  334 attttctgcaatccacgattg 354  Q
    ||||||  | |||||||||||    
T  22215024 attttccactatccacgattg 22215044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 41399615 - 41399571
Alignment:
Q  236 tattgttctgtgatacactatctcgtacaaaatgttgtcaaatag 280  Q
    |||||| | |||||||||||| | |||||||||||||||||||||    
T  41399615 tattgtgccgtgatacactatttagtacaaaatgttgtcaaatag 41399571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 27483064 - 27483135
Alignment:
Q  233 cgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcact 304  Q
    ||||||| ||||| ||||| |||||  ||||||||| ||||||||||| |||||||||||| || |||||||    
T  27483064 cgctattattctgagatacgctatccagtacaaaatattgtcaaatagcggctatagtggcactatagcact 27483135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 32187238 - 32187341
Alignment:
Q  234 gctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgct 333  Q
    |||||||||| |||||||| ||| | || ||||||||||||| || |||||| |||||  ||| ||||| | ||| ||||||||| ||| ||||| ||||    
T  32187238 gctattgttcggtgatacaatatttggtgcaaaatgttgtcatattgtggctgtagtgttgctatagca-tttagtgtagcatagcttgcacaaattgct 32187336  T
Q  334 atttt 338  Q
    |||||    
T  32187337 atttt 32187341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 16691021 - 16690915
Alignment:
Q  232 tcgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactg 331  Q
    ||||||||||||||| | ||||| | | |||||||||||| |||||||| || ||||  ||| || ||||||| | ||| |||  | |||||||||||||    
T  16691021 tcgctattgttctgttacacactgtttagtacaaaatgttttcaaatagagggtataacggcactatagcactgttgcgaagcgaaatttgaacaaactg 16690922  T
Q  332 ctatttt 338  Q
     ||||||    
T  16690921 ttatttt 16690915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 11501558 - 11501489
Alignment:
Q  270 ttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctattttc 339  Q
    ||||||||||||||||||||| ||  | |||||||||||| |||   | ||||||||||||| |||||||    
T  11501558 ttgtcaaatagtggctatagtagcattatagcactctagcatagtggaatttgaacaaactgttattttc 11501489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 22807145 - 22807100
Alignment:
Q  241 ttctgtgatacactatctcgtacaaaatgttgtcaaatagtggcta 286  Q
    |||||||||||||||| | |||| ||||||||||||||| ||||||    
T  22807145 ttctgtgatacactatttagtacgaaatgttgtcaaataatggcta 22807100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 14732208 - 14732284
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctatt 336  Q
    ||||||| ||||||||||||| |||| | | || ||||||||||  |||| ||||| | |||||| |||||||||||    
T  14732208 gtacaaagtgttgtcaaatagcggctgtggcggtgctttagcacggtagcatagcaaaatttgaagaaactgctatt 14732284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 36145326 - 36145358
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtgg 292  Q
    |||||||||||||||||||||| ||||||||||    
T  36145326 gtacaaaatgttgtcaaatagttgctatagtgg 36145358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 39550955 - 39551015
Alignment:
Q  233 cgctattgttctgtgatacactatctcgtacaaaatgttgtcaaatagtggctatagtggc 293  Q
    |||||||||| |||||||||||||   |||  || ||||||||||||| ||||||||||||    
T  39550955 cgctattgttttgtgatacactattgagtatgaagtgttgtcaaatagcggctatagtggc 39551015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 6025991 - 6025947
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcact 304  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||    
T  6025991 gtacaaaatgttgtcaaatagtggctatagcagcgctatagcact 6025947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 37129139 - 37129215
Alignment:
Q  260 gtacaaaatgttgtcaaatagtggctatagtggcgctttagcactctagcgtagcatagtttgaacaaactgctatt 336  Q
    |||||||||||||||| |||||| |||||| || ||  |||| || | |||||||| ||||| ||||||||||||||    
T  37129139 gtacaaaatgttgtcagatagtgtctatagcggtgcaatagccctgttgcgtagcagagtttaaacaaactgctatt 37129215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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