View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1880_low_6 (Length: 483)

Name: NF1880_low_6
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1880_low_6
NF1880_low_6
[»] chr7 (1 HSPs)
chr7 (1-483)||(48881915-48882396)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 48881915 - 48882396
Alignment:
Q  1 ttgacctcctcctcctaaccacttcggcacaaaacatagctcttctgatgaatattttgaaactcaaaattccgccctgcttacatactttccaatggcg 100  Q
    ||||||||||||||||| || |||| || |||||||| ||||||||||||||||||| ||| ||||||||||  ||| || |||   |||||||||||||    
T  48881915 ttgacctcctcctcctacccgcttctgctcaaaacattgctcttctgatgaatatttggaacctcaaaattcatcccagcgtacgatctttccaatggcg 48882014  T
Q  101 cctaactcaccaatgcttcccccctcgcactaatctcaatacaaacataatcccttgcaaagaatcatgcgttatgtgtgcatcatttgctgaaactcac 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48882015 cctaactcaccaatgcttgccccctcgcactaatctcaatacaaacaaaatcccttgcaaagaatcatgcgttatgtgtgaatcatttgctgaaactcac 48882114  T
Q  201 attttcttcccgtgcacaaaagccaaggaattttaggagaatattggcatgggaaatgtgattcgcgagctaatcattcagtctaacaatttcaccattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||    
T  48882115 attttcttcccgtgcacaaaagccaaggaattttaggagaatattggcatgggaaatgtgattcgcgagctactccttcaatctaacaatttcaccattt 48882214  T
Q  301 tgttgtttgannnnnnnnngataggttatcctatcaacaacaatagattgttgtcatgcttatttggagtctttggaagagtagtaaaacaaagctttga 400  Q
    |||||| |||         ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||    
T  48882215 tgttgtgtga-ttttttttgataggttatcctctcaacaacaatagattgttgtcatgcttatttgaagtctttggaagagtcgtaacacaaagctttga 48882313  T
Q  401 gagacgttagacacaccaactgctttcactagcactggagcaaaagataatctccaggaatggaaatgtgtgcaaagagttaa 483  Q
    ||| |||||||||| |||||||||||||||| | || ||||||||| || |||||| |||||||  |||||||||||||||||    
T  48882314 gagtcgttagacaccccaactgctttcactatccctcgagcaaaagttactctccatgaatggagttgtgtgcaaagagttaa 48882396  T

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