View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1880_low_7 (Length: 367)
Name: NF1880_low_7
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1880_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 37449657 - 37449993
Alignment:
| Q |
16 |
cttactagatttatctgattggaaacctggttgtattttatcaccaggtcatttcttctaccatattaaggtaccgcaagttaaaagcaaattatcctgc |
115 |
Q |
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| T |
37449657 |
cttactagatttatctgattggaaacctggttgtattttatcaccaggtcatttcttctaccatattaaggtaccgcaagttaaaagcaaattatcctgc |
37449756 |
T |
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| Q |
116 |
agagaaagagaaatatgatgcatcctgtgtttcagaccactataatatatctcttcttttggaagcttggagacctatatcaatgggatacnnnnnnngg |
215 |
Q |
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| T |
37449757 |
agagaaagagaaatatgatgcatcctgtgtttcagaccactataatatatctcttcttatggaagcttggagacctatatcaatgggatacaaaaaaagg |
37449856 |
T |
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| Q |
216 |
ttgttactgactaccttttttgtaaaactcatctactaatcatatatacattgttcaaaagaataaatatagttttacatgaaagactttagttgaaata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37449857 |
ttgttactgactaccttttttgtaaaactcatctactaatcatatatacattgttcaaaagaataaatatagttttacatgaaagactttaattgaaata |
37449956 |
T |
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| Q |
316 |
tcctacatttgaaaatgtaattcctttatcttatttt |
352 |
Q |
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| T |
37449957 |
tcctacatttgaaaatataattcctttatcttatttt |
37449993 |
T |
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