View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1880_low_8 (Length: 325)
Name: NF1880_low_8
Description: NF1880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1880_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 87 - 306
Target Start/End: Complemental strand, 41689523 - 41689291
Alignment:
| Q |
87 |
gtacaacaagtgctcttgttgtcatacaatggagacaaaacaaaaaa-------------caggttgaatgcccaaattgatatctaagaggaaccttac |
173 |
Q |
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| T |
41689523 |
gtacaacaagtgctcttgttgtcatacaacggagacaaaaaaaaaaaaaaaaaaaaaaaacaggttgaatgcccaaattgatatctaagaggaaccttac |
41689424 |
T |
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| Q |
174 |
tannnnnnncgatccagattaattttttatctaatctaataaaattaaggaatatatgtttcacaattcacagtagccatatatattgaattcaatattc |
273 |
Q |
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| T |
41689423 |
tatttttttcgatccagattaattttttatctaatctaataaaattaaggaatatatgtttcacaattcacagtagccatatatattgaattcaatattc |
41689324 |
T |
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| Q |
274 |
aagcatgattaagctaggtctagagatcagttt |
306 |
Q |
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| T |
41689323 |
aagcatgattaagctaggtctagagatcagttt |
41689291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 41689602 - 41689548
Alignment:
| Q |
9 |
gataatactgaaatcatatgccaaagtcaatcaaaagataacaagtgctggagtg |
63 |
Q |
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| T |
41689602 |
gataatactgaaatcatatgccaaagtcaatcaaaagataacaagtgcaggagtg |
41689548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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