View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18810_high_13 (Length: 319)
Name: NF18810_high_13
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18810_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 12752493 - 12752787
Alignment:
| Q |
17 |
agttgggaggagttaaggcattgaaaacatcattctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12752493 |
agttgggaggagttaaggcattgaaaacatcattctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatga |
12752592 |
T |
|
| Q |
117 |
actcccaccaggctttgcaatgccagtcgggctggcataattcacaggtagcacttgggcgctgatatcttccgatccattcaaatgaagagttttctga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12752593 |
actcccaccaggctttgcaatgccagtcgggctggcataattcacaggtagcacttgggcgctgatatcttccgatccattcaaatgaagagttttctga |
12752692 |
T |
|
| Q |
217 |
tttaatggcccagcaggaaattgtttgcggcaaggagaagcatcaataacatcatcattttcaggaaacttgcgactttgttgacaagaataatc |
311 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12752693 |
tttgatggcccagcaggaaattgtttgcggcaaggagaagcatcaataacatcgtcattttcaggaaacttgcgactttgttgacaagaataatc |
12752787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 12815453 - 12815747
Alignment:
| Q |
17 |
agttgggaggagttaaggcattgaaaacatcattctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12815453 |
agttgggaggagttaaggcattgaaaacatcattctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatga |
12815552 |
T |
|
| Q |
117 |
actcccaccaggctttgcaatgccagtcgggctggcataattcacaggtagcacttgggcgctgatatcttccgatccattcaaatgaagagttttctga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12815553 |
actcccaccaggctttgcaatgccagtcgggctggcataattcacaggtagcacttgggcgctgatatcttctgatccattcaaatgaagagttttctga |
12815652 |
T |
|
| Q |
217 |
tttaatggcccagcaggaaattgtttgcggcaaggagaagcatcaataacatcatcattttcaggaaacttgcgactttgttgacaagaataatc |
311 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12815653 |
tttgatggcccagcaggaaattgtttgcggcaaggagaagcatcaataacatcgtcattttcaggaaacttgcgactttgttgacaagaataatc |
12815747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 7768215 - 7768095
Alignment:
| Q |
17 |
agttgggaggagttaaggcattgaaaacatcattctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatga |
116 |
Q |
| |
|
|||||| ||||||||| | ||||||| ||||||||||| | ||||||| | |||||| ||||| || | || |||||||||||||||||| | ||||||| |
|
|
| T |
7768215 |
agttggaaggagttaaaggattgaaatcatcattctctgtgaaatcataaacttccaaactgcgttcgtttctatcaggagcaacattcttaacatatga |
7768116 |
T |
|
| Q |
117 |
actcccaccaggctttgcaat |
137 |
Q |
| |
|
||| |||| | |||||||||| |
|
|
| T |
7768115 |
acttccactaagctttgcaat |
7768095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 7779195 - 7779081
Alignment:
| Q |
19 |
ttgggaggagttaaggcattgaaaacatcattctctataaaatcattagcttccagactgcatttgcttttatcaggagcaacattctcagcatatgaac |
118 |
Q |
| |
|
|||| |||||||| | ||||||| | || |||||| | ||||||| | |||| | ||||| |||| | |||||| ||||||||||| ||||||||||| |
|
|
| T |
7779195 |
ttggaaggagttacaggattgaaatcgtcgttctctgtgaaatcataaacttctaaactgcgtttgttgctatcagaagcaacattcttagcatatgaac |
7779096 |
T |
|
| Q |
119 |
tcccaccaggctttg |
133 |
Q |
| |
|
| |||||| |||||| |
|
|
| T |
7779095 |
ttccaccaagctttg |
7779081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University