View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18810_high_17 (Length: 262)
Name: NF18810_high_17
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18810_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 17122213 - 17122455
Alignment:
| Q |
1 |
gcacgaaaaagaaagttaaatgtaagcaattagcaagggcttattaacctctagattcattgtttctcattataacatggtgtaccttcttgcaacaaat |
100 |
Q |
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| T |
17122213 |
gcacaaaaaagaaagttaaatgtaagcaattagcaa------attaacctctagattcattgtttctcattataacatggtgtaccttcttgcaacaaat |
17122306 |
T |
|
| Q |
101 |
tattcttcccaatttgagaaatctccatgttgccgcagcctatatgcggcaacacgacggtgccatacccgtttgcatcacctccatgtgaagtgaatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17122307 |
tattcttcccaatttgagaaatctccatgttgccgcagcctatatgcggcaacactacggtgccatacccgtttgcatcacctccatgtgaagtgaatca |
17122406 |
T |
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| Q |
201 |
tccttgagggacactaaaactataaaaaggtactctttcttagtacttc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17122407 |
tccttgagggacactaaaactataaaaaggtactctttcttagtacttc |
17122455 |
T |
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